Helicobacter pylori UM037: K750_09385
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Entry
K750_09385 CDS
T02659
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpyi
Helicobacter pylori UM037
Pathway
hpyi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpyi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K750_09385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyi03021
]
K750_09385
Transcription machinery [BR:
hpyi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K750_09385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
WYL_3
MCR_beta_N
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
AGL70541
UniProt:
A0AB33Z7L5
LinkDB
All DBs
Position
complement(1652755..1654797)
Genome browser
AA seq
680 aa
AA seq
DB search
MKKKANEEKAPKRAKQEAKAEATQEATQENKTKENNKAKESKLKEAKTKENKIKEAKAKE
PVPIKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSS
SEYAKKLNAIDKIKNTEEKQKVLNEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIK
LLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDD
ENSVSDSKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPVD
EKEDELVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYK
LPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLA
PNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMK
AVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQEN
GKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDH
IMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESS
AIKKLRSPQYGRILRNYLRI
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagccccaaaaagagctaaacaggaagccaaagca
gaagccacacaagaagccacacaagaaaataaaactaaggaaaacaataaagccaaagaa
agcaaacttaaagaagccaaaaccaaagaaaacaaaatcaaagaagctaaagcgaaagaa
cctgttcctattaaaaagcttagttttaatgaagcgttagaagaattgttcgctaattcc
ttaagcgattgcgtttcttatgagtccatcattcaaatcagcgcgaaagtccccactcta
gcccaagtcaaaaaaatcaaagaattgtgccaaaaataccaaaagaaattggtcagctct
tcagaatacgctaaaaaactcaatgcgattgacaagattaaaaacaccgaagaaaagcaa
aaagttttaaacgaagaattagaagatggctatgactttttgaaagaaaaggatttttta
gagtggagcaggagcgatagcccggtgcgcatgtatttgcgtgagatgggggatataaaa
cttttaagcaaagatgaagagattgaattgagcaagcaaatccgcttgggcgaagacatt
attttagacgcgatttgctcggtgccgtatttgattgattttatctatgcgtataaagac
gctttaatcaatcgtgaaagaagggttaaagagctttttaggagctttgatgatgacgat
gaaaatagcgtgagcgattctaaaaaagatgatgacagcgaagaagatgaagaaaacgaa
gaaaggaaaaaagtcgtttctgaaaaagacaagaagcgtgtagaaaaggttcaagaaagc
tttaaagccctagataaggctaaaaaagaatggctcaaagcccttgaagcccctgtagat
gaaaaagaagatgaattggtgcgtttattgaccctagcctacaaacgccaaacgctcaaa
gacagactctatgacttagagcctaccagcaaactgattaatgaattagtcaaaacgatg
gaaaccactttaaaaagtggcgatgggtttgaaaaagagttgaaacgcttggaatacaaa
ctgcccttattcaatgacactctgatcgctaaccataaaaaaatcctcgctaatatcact
aacatgactaaagaagatattatcgctcaagtgccagaagcgactatggtgagcgtgtat
atggatctcaaaaagctttttttgactaaagaagcgagcgaagagggttttgatttagcc
cccaacaagctgaaagaaattttagaacaaatcaaaagagggaaattgatttctgatcgc
gctaaaaacaaaatggctaaatccaatttaaggctggtggtgagcatcgctaaacgattc
acgagcagaggcttgccattcttggatttgattcaagagggtaatattggcttgatgaag
gcagtggataagtttgagcatgaaaagggcttcaagttttctacctatgcgacatggtgg
atcaaacaagctatcagcagggccatagccgatcaagcccgcaccatccgcatccccatt
cacatgattgacaccattaatcgcatcaataaagtcatgcgcaaacacattcaagaaaac
ggcaaagagcctgatttagaggtggtggctgaagaagtggggctttcgttagataaggtg
aagaatgtgattaaggttaccaaagagcctatcagtttggaaaccccagtcggcaatgat
gatgacggcaaatttggggattttgtggaagataagaatatcgttagttctattgatcac
atcatgcgcgaagacttaaaagcgcaaattgaaagcgttttggatcagttgaatgagcga
gaaaaagcggtgatccgcatgcgttttgggcttttagacgatgaaagcgatcgaacttta
gaagaaattggcaaggaattgaatgttactagagaaagggtgcgccagattgaaagctct
gcgatcaaaaaattgagaagtccgcaatacgggcgcattttgagaaactatttgcgcatt
tga
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