Helicobacter pylori oki898: HPOKI898_00885
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Entry
HPOKI898_00885 CDS
T03729
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hpyj
Helicobacter pylori oki898
Brite
KEGG Orthology (KO) [BR:
hpyj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpyj03032
]
HPOKI898_00885
03400 DNA repair and recombination proteins [BR:
hpyj03400
]
HPOKI898_00885
Enzymes [BR:
hpyj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPOKI898_00885
DNA replication proteins [BR:
hpyj03032
]
Prokaryotic type
DNA Topoisomerases
HPOKI898_00885
DNA repair and recombination proteins [BR:
hpyj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPOKI898_00885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF1272
Zn_ribbon_LysW
Lar_restr_allev
zf_Rg
DUF7575
Motif
Other DBs
NCBI-ProteinID:
AHN44322
LinkDB
All DBs
Position
172312..174522
Genome browser
AA seq
736 aa
AA seq
DB search
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDH
KELVKQIIELSKKASITYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILN
ALKTPRKIDMSKVNAQQARRFLDRIVGFKLSSLISSKITKGLSAGRVQSAALKLVIDRER
EIKAFKPLTYFTLDAYFEPHLEAQLISYKGNKLKAQELIDEKKAQEIKNELEKESYIISS
IVKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRT
DSLNIAKEALEEARDKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALK
DYLKPEELRLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGYYKILGN
DDKDKLLPNLKENDPIKLEKLESNAHVTEPPTHYSEASLIKVLESLGIGRPSTYAPTISL
LQNRDYIKVEKKQISALESAFKVIEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQV
LKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKY
IKQTENANNEAKQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNAKEIIEG
VKCPECGGDIALKRSKKGSFYGCNNYPKCHFLSNHKPINKRCEKCHYLMSERIYRKKKAH
ECIKCKERVFLEEDNG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaccttattattgtagaatccccagcaaaagccaaaaccattaaaaattttttg
gataaaaattacgaagtcatcgcctctaaagggcatgttagggatttatccaaattcgct
ttaggcattaagattgatgaaacaggcttcactcctaattatgtcgtggataaagatcat
aaagaacttgtcaaacaaatcatagagctttctaaaaaagcatctattacttatattgct
accgatgaagacagagagggggaagcgataggttatcatgtggcatgtttgattggaggg
aaattggagagctatcctaggattgtttttcatgagatcacgcaaaatgcgattttaaac
gctctaaaaaccccacgaaaaattgacatgtctaaggtcaatgcccaacaagccaggcgt
tttttagatcggatcgtgggttttaagctcagctcgttgatttcatctaaaatcactaaa
ggtttgagcgctgggcgggtgcaaagcgcggctttaaagcttgtgattgatagagaaagg
gaaatcaaagcctttaagcctttaacctacttcacgctagacgcttattttgagccgcat
ttagaagcgcaactcatcagctataagggcaacaaactcaaagcccaagaactcattgat
gaaaaaaaagctcaagagattaaaaacgaattagaaaaagaaagctatattatttctagt
atcgttaaaaagtctaaaaaatcccccacaccgccccctttcatgacttccactttacag
caaagcgcttccagtcttttaggcttttcgcctacaaaaaccatgagtatcgctcaaaaa
ttgtatgaaggcgtagccaccccgcaaggcgttatgggggtgatcacttacatgaggacc
gatagcttgaatatcgctaaagaggctttagaagaagcgagggataagattttaaaagac
tatggcaaagactacttaccccctaaagccaaagtctattccagcaagaataaaaacgcc
caagaagcccatgaagcgatcaggcccacttctattattttagagccaaacgctttaaaa
gactaccttaagcctgaagaattaaggctctatactttaatttacaaacgctttttagct
tctcaaatgcaagacgctctttttgaaagccaaagcgtggttgtggcttgcgaaaaaggc
gagtttaaagcgagtggcagaaaactcctttttgatggctattataaaattttaggcaat
gacgataaggacaaattgctccccaatttgaaagaaaatgaccccattaaattagaaaaa
ctagagagcaacgcccatgttacagagcctccaacgcactattcagaagcgagtttgatt
aaagttttagaaagtttaggcataggcaggcctagcacctacgccccaacgatttctctt
ttacaaaacagagactacatcaaggtagaaaaaaagcaaatcagtgctttagagagcgct
tttaaagtgatagaaattttagaaaagcattttgaagagattgtggattccaaattcagc
gcttctttagaagaggaactggacaatatcgctcaaaataaagccgactaccagcaagtc
ttaaaggacttttactacccttttatggataaaattgaagccgggaaaaagaatatcatc
tctcaaaaagtgcatgaaaaaaccggccaatcatgccctaaatgcggaggagaattagtc
aaaaagaatagccgttatggggagtttatcgcttgcaacaattaccctaaatgcaaatat
atcaaacaaactgagaacgctaataatgaagccaagcaagaattgtgcgaaaaatgcgga
ggggaaatggtgcaaaaattcagcagaaacggggcgtttttggcttgcaacaactaccct
gaatgcaaaaacaccaaatcgttaaaaaacacccctaacgcaaaagaaataatagaaggc
gtgaaatgcccagaatgcggaggggatattgccttaaaaaggagtaagaaaggctcgttt
tatggctgtaacaattaccctaaatgccattttttatccaaccataagcccatcaacaag
cgttgtgaaaaatgccattatttgatgagcgaaagaatctatcgcaaaaaaaaggcgcat
gaatgcattaaatgcaaagagcgcgtgtttttagaggaagataatggctaa
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