KEGG   Helicobacter pylori oki898: HPOKI898_04630
Entry
HPOKI898_04630    CDS       T03729                                 
Name
(GenBank) toxin
  KO
K11028  vacuolating cytotoxin
Organism
hpyj  Helicobacter pylori oki898
Pathway
hpyj03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:hpyj00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    HPOKI898_04630
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:hpyj02000]
    HPOKI898_04630
   02044 Secretion system [BR:hpyj02044]
    HPOKI898_04630
   02042 Bacterial toxins [BR:hpyj02042]
    HPOKI898_04630
Transporters [BR:hpyj02000]
 Other transporters
  Pores ion channels [TC:1]
   HPOKI898_04630
Secretion system [BR:hpyj02044]
 Type V secretion system
  Autotransporter-1 (AT-1) family
   HPOKI898_04630
Bacterial toxins [BR:hpyj02042]
 Type III toxins: Intracellular toxins
  Others
   Vacuolating cytotoxin
    HPOKI898_04630
 Type II toxins: Membrane damaging toxins
  Pore-forming toxins, Other
   HPOKI898_04630
SSDB
Motif
Pfam: VacA
Other DBs
NCBI-ProteinID: AHN45018
LinkDB
Position
943222..947133
AA seq 1303 aa
MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGL
LSWGLKQAEEANKTPDKPDKVWRIQAGRGFNNFPNKEYDLYKSLLSSKIDGGWDWGNAAR
HYWVKDGQWNKLEVDMKDAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFNGNSFTSFKD
GANRTTRVDFNAKNILIDNFVEINNRVGSGAGRKASSTVLTLQASEKITSRENAEISLYD
GATLNLVSSSNHSVDLYGKVWMGRLQYVGAYLAPSYSTIDTSKVEGEMNFRHLAVGDQNA
AQAGIIANKKTNIGVLDLWQSAGLNIIAPPEGGYESKNKDNPQNNPKNDTQKTETEPTQV
IDGPFAGAKDTVVNIFRLNTNADGTIRVGGFKASLTTNVAHLHIGEGGVNLSNQASGRTL
LVENLTGNITVEGALRVNNQVGGSAVAGSSANFEFKAGADTNNGTATFNNDIHLGKAVNL
RVDAHTAYFNGNIYLGKSTNLRVNGHSAHFKNIDATKSDNGLNTSALDFSGVTDKVNINK
LTTSATNVNIKNFDIKELVVTTRVQSFGQYTIFGENIGDKSRIGVVSLQTGYSPAYSGGV
TFKGGKKLVIDELYHAPWNYFDARNVTDVEINKKILFGAPGYIAGKTGLMFNNLTLNSNA
SMDYGKDLDLTIQGHFTNNQGTMNLFVQDGRVATLNAGHQASMIFNNVVDSATGFYKPLI
KINNAQNLTKNKEHVLVKARNIDYNLVGVQGASYDNISASNTNLQDQFKERLALYNNNNR
MDICVVRKNNTDDIKACGMAIGNQSMVNNPENYKYLEGKAWKNTGINKTANNTTIAVNLG
NNSAPTENGGNTTNLPTNTTNKARFASYALIKNAPFARYSATPNLVAINQHDFGTIESVF
ELANRSSDIDTLYANSGGTGRDLLQTLLIDSHNAGYARTMIDATSANEITKQLNTATTTL
NNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAQRLQALKGQRFASLESA
AEVLYQFAPKYEKPTNVWANAIGGTSLNNGSNASLYGTSAGVDAYLNGEVQAIVGGFGSY
GYSSFSNQANSLNSGANNTNFGVYSRLFANQHEFDFEAQGALGSDQSSLNFKSTLLQDLN
QSYHYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSNQKVALSNGSS
SQHLFNASANMEARYYYGDTSYFYMNAGVLQEFARFGSNNAASLNTFKVNATRNPLNTHA
RVMMGGELQLAKEVFLNLGVVYLHNLISNASHFASNLGMRYSF
NT seq 3912 nt   +upstreamnt  +downstreamnt
atggaaatacaacaaacacaccgcaaaatcaatcgccctctggtttctcttgctttagta
ggagcgttagtcagcatcacaccgcaacaaagtcatgccgcctttttcacaaccgtgatc
attccagccattgttgggggtatcgctacaggcgctgctgtaggaacggtctcagggctt
cttagctgggggctaaaacaagccgaagaagccaataaaaccccggataaacccgataaa
gtttggcgcattcaagcaggcagaggctttaataatttccctaacaaggaatacgactta
tacaaatcccttttatccagtaagattgatggaggttgggattgggggaatgccgctagg
cattattgggtcaaagacgggcaatggaacaagcttgaagtggatatgaaagacgctgta
gggacttataacctctcaggccttatcaactttaccggtggggatttagatgtcaatatg
caaaaagccactttgcgtttgggccaattcaacggcaattctttcacaagctttaaggat
ggcgctaaccgcaccacgagagtggattttaacgctaaaaatatcttaattgataatttt
gtagaaatcaataatcgtgtgggttctggagccgggaggaaagccagctctacggttttg
actttgcaagcttcagaaaaaattacaagccgtgaaaacgcggaaatttctctttatgat
ggcgccacgctcaatttggtttcaagctcaaatcatagcgttgatctttatggtaaggtg
tggatgggccgtttgcaatacgtgggagcgtatttagccccttcatacagcacgatagac
acttcaaaagtagaaggggaaatgaattttcgccatctcgctgtgggtgatcaaaacgcc
gctcaagcgggcattatcgctaataaaaagactaatattggtgtgttagatttgtggcaa
agtgcggggttaaacattatcgctcctccagaaggcggttatgagagtaaaaacaaagat
aaccctcaaaataaccctaaaaatgacacgcaaaaaacagaaactgagcccacgcaagtc
attgatgggccttttgctggcgccaaagacacggtggtcaatatttttcgtttgaacact
aacgctgatggcacgattagagtgggagggtttaaagcttctcttaccaccaatgtggct
catttgcatatcggcgaaggcggtgtcaatctgtccaatcaagcgagcgggcgcaccctt
ttagtggaaaatctaaccgggaatatcaccgttgagggggctttaagggtgaataatcaa
gtgggcggttctgctgtggcaggctcaagcgcgaattttgagtttaaggctggtgctgat
accaacaacggcacagccacttttaataacgatatccatctaggaaaagcggtgaattta
agagtggatgctcatacagcttattttaatggcaatatttatctgggaaaatccacgaat
ttaagagtgaatggccatagcgctcattttaaaaatattgatgccacaaagagcgataac
gggctaaacactagtgctttggattttagcggcgttacagacaaagtcaatatcaacaag
ctcactacatctgccactaatgtgaacattaaaaactttgacattaaggaattagtggtt
acaacccgtgttcagagttttgggcaatacactatttttggcgaaaatataggcgataag
tctcgcattggtgtcgttagtttgcaaacgggatatagcccggcctattctgggggcgtt
acttttaaaggtggtaaaaaactggttatagatgagctttaccatgccccttggaattat
tttgacgctaggaatgttactgatgttgaaatcaacaagaaaattctttttggagcccca
ggatacattgctggcaaaacagggcttatgtttaataacctaaccctaaacagcaacgca
agcatggattatggtaaagatttggatttaaccattcaagggcatttcaccaataatcaa
ggcacgatgaatctttttgtccaagatgggcgtgtagcgaccttaaatgcaggccatcaa
gcaagcatgatatttaataatgtagtggatagcgcgaccggattttacaaaccactcatt
aagatcaataacgctcaaaacctcactaaaaataaagaacatgttttagtgaaagcgcga
aacattgattataatttagtaggagtgcaaggcgctagttatgacaatatttctgcaagc
aataccaatctgcaagatcaattcaaagagcgcctagccctttataacaacaataaccgc
atggatatttgtgtggtgcgaaaaaataataccgatgatattaaagcatgcgggatggct
atcggcaatcaaagcatggtgaataaccctgaaaattacaagtatcttgaaggtaaggca
tggaaaaatacagggatcaataaaacggctaacaacaccacaatcgctgtcaatttaggc
aacaattctgcacctactgagaatggtggcaataccacaaatttacctacaaacaccact
aacaaggcgcgttttgctagctacgctctcataaagaacgctcctttcgctcgttatagc
gctactcctaatttagtcgctatcaatcagcatgattttggcaccattgaaagcgtgttt
gaattggctaaccgctctagtgatattgacacgctttatgccaactcaggcggcacaggc
agggatctcttacaaaccttattgattgatagccataatgcgggttatgccagaacaatg
attgatgctacaagcgctaatgaaatcaccaagcaattgaatacggccactaccacttta
aacaacatagccagtttagagcataagacaagcggcttacaaactttgagtttgagtaat
gcgatgattttaaattctcgtttagtcaatctctctagaaggcacaccaaccatattgac
tcgttcgctcaacgcttacaagctttaaaaggccaaagattcgcttctttagaaagcgcg
gcagaagtgttgtatcaatttgcccccaaatatgaaaaacctaccaatgtttgggctaac
gctattggaggaacgagcttgaataatggctccaacgcttcattgtatggcacaagcgcc
ggcgtagatgcttaccttaacggggaagtacaagccattgtgggcggttttggaagctat
ggttatagctcctttagtaatcaagcgaactctcttaactctggggccaataacactaat
tttggcgtgtatagccgtctctttgccaaccagcatgaatttgactttgaagctcaaggg
gcactagggagtgatcaatcaagcttgaatttcaaaagcactctactgcaagatttgaat
caaagctatcattacttagcctatagcgctgcaacaagagcgagctatggttatgacttt
gcgttttttaggaatgctttagtgttaaaaccaagcgtgggcgtgagctataaccattta
ggctcaaccaactttaaaagcaacagcaatcaaaaagtggctttgagtaatggctctagc
agtcagcatttattcaacgctagcgctaatatggaagcgcgctattattatggggacact
tcatacttctatatgaacgctggagttttacaagagttcgctcgctttggatctaataac
gccgcgtctttaaacacttttaaagtgaatgccactcgtaaccctttaaatacccatgcg
agagtgatgatgggtggggaattgcaattggctaaagaagtgtttttgaatttgggcgtt
gtttatttgcacaatttgatttccaacgcaagccatttcgcttccaatttaggaatgagg
tatagtttctaa

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