Helicobacter pylori oki898: HPOKI898_05865
Help
Entry
HPOKI898_05865 CDS
T03729
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hpyj
Helicobacter pylori oki898
Pathway
hpyj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOKI898_05865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyj03400
]
HPOKI898_05865
DNA repair and recombination proteins [BR:
hpyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOKI898_05865
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPOKI898_05865
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
DUF87
HAM1_N
Kinesin
AAA_7
Microtub_bd
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHN45219
LinkDB
All DBs
Position
complement(1193109..1195100)
Genome browser
AA seq
663 aa
AA seq
DB search
MRVLKMPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQT
NKPTLIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSIN
DDLECLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKL
VEMGYSRNEVVFDRGSFRAMGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIK
RLDSIMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEM
ISTTGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAG
DMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQII
RPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKA
RYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSET
SLIQTMGRAARNANGKVLLYAKKTTQSMQKAFEVTSYRRAKQEEFNKLHNITPKTVTRAL
EEELKLRDDEIKIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQL
RTL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcgagttttaaagatgcctttatttgatttaaaaagcccttacccaccagcaggcgat
cagccccaagccatagaagctttaacaaaaagcttgaaaaataacaaccattatcaaact
ctagtgggggttacagggagcggtaagacttatacgatggccaatatcatcgctcaaacc
aataaacccactttgatcatgagccataataagaccttatgcgcacagctttatagcgag
tttaaggcgtttttcccgcataatagggtggagtattttatctcccactttgattactac
cagcctgaaagctatatccctaggagggatttatttattgaaaaagacagctctattaac
gatgatttagagtgtttgagattgagcgcgaccacctcacttttaggttatgatgatgtg
atcgtgatagcgagcgtttcggctaattatggtttgggtaaccctgaagaatatttaaaa
gtcatggaaaaaatcaaagtgggtgagaagcgcgcttacaagagctttttattaaagcta
gtagaaatgggttatagccgtaatgaagtggtgtttgatagggggagctttagagcgatg
ggggaatgtgtggatattttccccgcttataatgacgctgaatttattaggattgaattt
tttggcgatgagatagaaaggattgcagtctttgacgctttagaaagaaatgaaatcaaa
cgcttggattctattatgctttatgcggccagtcagtttgccgtagggagcgagaggctg
aatttagccattaaaagcattgaagatgaactcgctttaagattgaaattttttaaagag
caggataaaatgcttgaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatg
attagcacgaccggtgtgtgtaagggcattgaaaattacgcgcgccatttcaccggtaaa
gcccctaacgaaacgcctttttgcttgtttgattatttagggatatttgagcgggagttt
ttagtcattgtagatgaaagccatgtgagtttgccgcagtttggagggatgtatgcaggg
gatatgagcaggaaaagcgttttagtggaatatggttttagattgcctagcgctttagac
aaccgccctttaaaatttgatgaatttatccataaaaattgccagttcctttttgtgtcc
gctacgcccaataagctcgaattagagctttccaaaaagaatgtcgctgagcaaatcatt
cgccctacagggcttttagaccctaaatttgaagtgcgagacagcgataagcaggtccag
gatttatttgatgaaatcaagttagtggtggccagagatgaaagggtgctcatcaccacg
ctcactaaaaaaatggcagaagaattgtgcaaatattatgctgaatggggcttgaaagcg
cgttacatgcatagtgaaattgatgcgattgaaagaaatcacatcatccgctctttaagg
cttaaggaatttgacattttaatagggatcaatcttttaagagaagggttggatttgcct
gaagtctctttagtagcgatcatggatgcggataaagaagggtttttaaggagtgaaaca
agcctcattcaaaccatggggcgagccgctagaaacgctaatggcaaggttttattatac
gctaaaaaaaccactcaaagcatgcaaaaagcctttgaagttactagctacaggcgcgct
aagcaagaagagttcaataagcttcataatatcacccccaaaaccgttactcgcgcttta
gaagaggagttgaaattaagagacgatgagattaaaatcgctaaagccttaaaaaaggac
aaaatgcctaaaagcgaaagggaaaaaatcattaaagaactggataaaaaaatgcgagaa
tgcgcgaaaaatttggattttgaagaagcgatgcgtttgagagacgaaatcgctcaatta
agaacgctttaa
DBGET
integrated database retrieval system
