Helicobacter pylori oki898: HPOKI898_06635
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Entry
HPOKI898_06635 CDS
T03729
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hpyj
Helicobacter pylori oki898
Pathway
hpyj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOKI898_06635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyj03019
]
HPOKI898_06635
03016 Transfer RNA biogenesis [BR:
hpyj03016
]
HPOKI898_06635
Enzymes [BR:
hpyj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HPOKI898_06635
Messenger RNA biogenesis [BR:
hpyj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPOKI898_06635
Transfer RNA biogenesis [BR:
hpyj03016
]
Prokaryotic type
tRNA degradation factors
HPOKI898_06635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
Motif
Other DBs
NCBI-ProteinID:
AHN45350
LinkDB
All DBs
Position
complement(1341658..1343592)
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AA seq
644 aa
AA seq
DB search
MQGFLRSLFFGVKKIPKRFAPLVEKGVLKEVLQSNKDRYFLKEGFDIGRIEWVKNKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRPIAFFKAALFDAQDTMIAYLAKEKN
QIVAIPFKEPFKKPISLKHSQRSLLELPRHCVVKIDLKKREISEILGPLEDPLIDENLSL
SLFDRIKDFSKDCLNLAQHYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKYSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLKNARLFQGVIEVRANCTYEEINHFLSANQSSLDKDLQQSLLGFLEVALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETETESDVHTLIEEAMLLANQSSAGLLDEHF
HNKGIYRTHKEPSLEQQKRLYAKLFDYEIVRPKNMGFFPFLEHALKIAKEKKLEREVSRL
IIKSQNLALYSPMQESHFGLGFDSYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCTELNALQKKAALIERDFIKRKFARLALELLEKEFLGVVLEVKDWVVVGLKEFIG
LKVLVKTNKVFKPLEKVCVKITHADLILGQVRGEIAERIKEHVS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagcttgttttttggggttaaaaagatccctaaacgattcgct
cccctagtagaaaagggcgttttaaaagaagtgcttcaatcaaataaggatcgctatttt
ttaaaagaaggctttgatataggtaggattgaatgggtaaaaaataaggcgtttttcatt
tctttagcgaaaaattaccctaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgccaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgctctttttgatgcacaagacacgatgatagcttacttggctaaagaaaaaaac
cagattgtggctatcccttttaaagagccttttaaaaaacctatttctttaaagcacagc
caaagatccttattagaattgcctaggcattgcgtggtgaagatcgatcttaaaaagcgt
gaaatcagcgaaattttagggcctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgtttgaatttagcccaacattac
gcgcaacttaaagcgagcgattttaaagacaggatcaattattctcacatcccttttatc
accattgaccccaaagacgctaaagattttgacgatgcgattttttatgaccaagaaaaa
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctaggattaggggctttagcgtgtatttccctaacagcgtctatcccatg
ctgcctttgagtttgtctcaaggggcatgctcattaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagataatttgaaaaacgctcgattgtttcaaggcgttatt
gaagttagggctaattgcacttatgaagaaatcaatcattttttaagcgctaatcaaagc
tctttagataaagatttgcaacaaagccttttggggtttttagaggtggctttaaagtta
aaaaaggagcgtttaaaaaaagggtttaatttcaattcgtttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaaaattgaaacagaaacagaaagcgatgtgcacaccctc
atagaagaagccatgctgttagccaaccaatctagcgcagggttattagatgagcatttt
cacaataaggggatataccgcacccataaagagccgagtttggagcagcaaaaacgcctt
tacgctaagctttttgattatgagattgtgcgccctaaaaacatgggcttttttcctttt
ttagagcatgccttaaaaatagctaaagaaaagaagttagaaagagaagtttcgcgcttg
atcattaaatctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttgatagctatacgcatttcacttcgcccattagacgatacagcgatctagcctta
cacaggcttttaaaagaattattattccatcaagctaaaggctgttcgtatttgttagaa
gaaacgcctgaattatgcactgagttgaacgctttgcaaaaaaaggccgctttgattgaa
agggatttcatcaagcgcaaattcgcccgcttagctttagaacttttagaaaaagaattt
ttgggcgttgttttggaggttaaagattgggtggtggtggggttaaaagaatttataggg
cttaaagttttagtcaaaacgaacaaggtttttaagcctttagaaaaggtatgcgttaaa
atcacgcatgcggatttgattttagggcaagttagaggcgaaatcgcagaaaggattaaa
gagcatgtatcgtaa
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