Helicobacter pylori oki898: HPOKI898_07390
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Entry
HPOKI898_07390 CDS
T03729
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hpyj
Helicobacter pylori oki898
Pathway
hpyj03030
DNA replication
hpyj03430
Mismatch repair
hpyj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpyj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPOKI898_07390
03430 Mismatch repair
HPOKI898_07390
03440 Homologous recombination
HPOKI898_07390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpyj03032
]
HPOKI898_07390
03400 DNA repair and recombination proteins [BR:
hpyj03400
]
HPOKI898_07390
Enzymes [BR:
hpyj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPOKI898_07390
DNA replication proteins [BR:
hpyj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPOKI898_07390
DNA repair and recombination proteins [BR:
hpyj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPOKI898_07390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
AHN45495
LinkDB
All DBs
Position
complement(1472348..1475983)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLKEHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAQNEGLNFEDDASYFAHKAREGLKEHLILVPKEKHDQYKERLEKEIEVITSMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSNFE
DIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKVKFVEGAKNLGHDSQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKGDYESLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMEGGIKEQVILDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLSTLEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAKEVKIPKARYKDPDKQKEEVREIPPIEILA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKDKQFKIQSDLMVNEKIKD
DFKGLEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaataaagctttcacgcatttgcacttgcacacagaatattcgcttttagac
ggggcgaacaagattaaaattttagccaaacgcgttaaagaattgggcatgaaaagcgtg
agcgtaactgatcatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gaaggcattaagcctatcatcggcatggaagcgtatatccataacgatgacaacctttct
agcaaagaaaccaagcaacgcttccatttgtgcctgttcgctaaaaaccaagagggctat
gaaaatttgatgttcttaagctctatggcgtatttagaagggttttattacttcccgcgc
atcaataaaaagcttctaaaagagcattctaaaggcattatcgcttctagcgcgtgcttg
caaggggaagtcaattaccatttaaatactaataatgagagaaaccgcaagtatggggct
aaaggctatgatgaagctaaaagaattgcttgcgaataccaagagatttttgaagacgat
ttttatttagaaatcatgcgccatggtattttagatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacggggttaaaaatcatcgccaccaacgacacccactacacc
atgcctaatgacgccaaggctcaagaagtggcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacatcaagtcccctgaagaa
atggcaaagctctttgcagatattccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccctccaagc
ttcaaattcactaaagcttacgctcaaaatgaggggctgaattttgaagatgacgcttct
tatttcgcccataaggctagagagggcttgaaagagcacttaattttagtgcctaaagaa
aagcatgatcaatacaaagagcgcttagaaaaagaaattgaagtcattacgagcatgaaa
ttcccagggtatatgttgattgtgtgggattttatccgttacgctaaagaaatgggtatt
cctgtggggcctggtagggggagcgcggccgggagtttggtggcttttgctttaaaaatc
acggatattgaccccttgaaatacgatttgctctttgaaaggtttttaaaccctgaaaga
gtcagcatgcctgatattgatacggatttttgccaacgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataagatg
ttggctaaaggcgtgatcagagatgtcgcaagggttttggacatgccttataaagaagcc
gatgattttgccaaactcattcctaaccgcttaggtatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattagtagag
agtaatgaattagccaaacaagtgtgggagtattcgctcaatttagagaatttaaatcgc
aacgcaggcgtgcatgccgcagccttagtggtggatagccaaaaagagttgtggcacaaa
acccctttatttgcctctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagagccggtggatttgattaagtttgactttttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcagcataaaattagcgtggattttttatcgttg
gatatggacgatccgaaagtgtataaaacgatccaaagcggggatacggtggggatattc
cagattgaatctgggatgtttcaagggcttaacaaacgcttaaggccttcaaactttgaa
gacattatcgccattatcgcgctaggccgaccggggcctatggaatcaggcatggtagat
gattttgtgaatagaaagcatggcgttgagcctatcgcttatgcgtttaaagaattagag
ccgattttaaagcccacttacggcacgatcgtctatcaagagcaagtgatgcaaatcgtg
caaactatcggcggttttagtttgggtgaagcggatctcatccgccgcgctatggggaaa
aaagacgctcaaatcatggcggacaataaggttaagttcgtagaaggcgctaaaaattta
gggcatgatagccaaaaagcggctaatttgtgggatttgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcggccgcttatgcgatgatcactttccaaacggcgtattta
aagacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatt
gaatccgtggcgcgctatattgatgaggtcagggctttagaaattgaagtgatgcctccg
cacatcaattcttccatgcaagatttcagcgtggcggagtttaaaaatcaaaaaggcgag
ctagaaaagaaaattgtgtttggtttaggagcggttaaaggggttgggggtgagccgatt
aaaaacatcattgaagaaagggctaaaggggattatgagagtttagaagattttatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattagtgaaatcagggagc
ttggacaatttaggctacactagaaaaaccatgctcgctaacttggatttgatctgcgat
gcggggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaactccctttttgga
gccatggaaggcggaattaaagagcaggttattttggacatggttgatttgggcgaacat
gacgctaaaacgcttttagaatgcgaatacgagactttgggcatccatgtttcaggcaac
cctttagacgagtttaaagaagaaattaagggctttaaaaatttagtcaaaagcattgat
attgaagaattagaaatcggctcgcaagcttatttgctgggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaagccttatggcacagcggacattttggatcgatac
ggcaagtttgaactcatgctttttgaaaagcaattgagcactttagaagagttggatatt
aataagcctttagtgtttaaatgcaagattgaagagcaagaagaagtggcacgattaagg
ctttttgaaatcttggatttagagagtgccaaagaggttaaaatccctaaagcccgctat
aaagaccctgacaagcaaaaagaagaggtgcgcgaaatcccccccattgaaatactcgcc
tccagttcttgctctttagcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctttaaaacaccagggcaaacgccccttgtatttgatcatcaaa
gataaggataagcaattcaaaatccaaagcgatttaatggtaaatgaaaagattaaggac
gattttaaagggttagagtggagggatttagcttga
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