Helicobacter pylori Aklavik86: HPAKL86_02210
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Entry
HPAKL86_02210 CDS
T02353
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpyk
Helicobacter pylori Aklavik86
Pathway
hpyk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPAKL86_02210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyk03019
]
HPAKL86_02210
03009 Ribosome biogenesis [BR:
hpyk03009
]
HPAKL86_02210
Enzymes [BR:
hpyk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPAKL86_02210
Messenger RNA biogenesis [BR:
hpyk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPAKL86_02210
Ribosome biogenesis [BR:
hpyk03009
]
Prokaryotic type
rRNA helicases
HPAKL86_02210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AFX89455
UniProt:
K7Z0A4
LinkDB
All DBs
Position
446106..447584
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSKIELFEIPTINENQIIKTLKNVKVSEEIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKTPNKKTHQHEHARSFKKGQHKDRHP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaaccaccactccctacagaaattgatgatgacgcttaccataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatctgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggaagagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctttgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccactagagaattagcc
atgcaaattagcgatgagattttcaaattaggcaaacacactaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaagcaatgcgaatttattaagaaaaacccccaagtg
atgatcgctacaccaggaaggttgctagatcacttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactatctccctagcgaagcgcagatcttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catattgccccctctaatatcactaacaccgacatcacccaacgcttttatgtgatcaat
gagcatgagagggccgaagcgatcatgcgccttttagacacccaagcgcccaaaaagagc
attgtttttatgcgcaccaaaaaagaagctgatgaattgcaccaattcctcgcttctaaa
aattacaaaagcaccgctttgcatggggatatggatcaaagggatcggcgcgcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagccgtggg
ttagatattagcggtgtaagccatgtgttcaattaccacttgcccctaaataccgagagc
tatatccatcgcattgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcaaaaatt
gagctttttgaaatccccaccattaacgaaaatcagatcattaaaaccttgaaaaatgtc
aaagtgtctgaagaaatcatcagcctttatgaacagcttactgaaatttttgagccatct
caattggttttaaaacttttgagtttgcagtttgaaaccagcaaaattggcttaaaccag
caagaaattgatgcaattcaaaaccctaaagaaaaaacgccaaaaacccctaacaaaaaa
acgcaccagcatgagcacgcgcgttctttcaaaaagggtcagcacaaagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
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