Helicobacter pylori Aklavik86: HPAKL86_05790
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Entry
HPAKL86_05790 CDS
T02353
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hpyk
Helicobacter pylori Aklavik86
Pathway
hpyk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPAKL86_05790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyk03400
]
HPAKL86_05790
DNA repair and recombination proteins [BR:
hpyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPAKL86_05790
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPAKL86_05790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
Kinesin
AAA_30
AAA_7
Microtub_bd
DUF87
UBA
Motif
Other DBs
NCBI-ProteinID:
AFX90148
UniProt:
K7YAU4
LinkDB
All DBs
Position
complement(1219185..1221155)
Genome browser
AA seq
656 aa
AA seq
DB search
MPLFDLKSPYPPAGDQPKAIESLTKSLKNNNHYQTLVGVTGSGKTYTMANIIANTNKPTL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL
LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK
LREVKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgcctttatttgatttaaaaagcccttacccaccagcaggcgatcagccaaaagccata
gaatccttaacgaagagcttgaaaaataacaatcattatcaaactttagtgggggttaca
gggagcggtaaaacttatacgatggccaatatcatcgctaataccaataaacccactctg
atcatgagtcataataagaccttatgcgcgcagctctatagcgaatttaaggcgtttttc
ccgcataatagggtggagtattttatctcccactttgactactaccagcctgaaagctat
atccctagaagagatttattcattgaaaaagacagctctattaatgatgatttagagcgt
ttgaggttgagcgcgaccacctcacttttaggttatgatgatgtgattgtgatagcgagc
gtttcggctaattatggtttgggtaaccctgaagaatatttaaaagtcatggaaaaaatc
aaagtgggcgagaagcgcgcttataagagctttttattaaagctagtagaaatgggttat
agccgtaatgaagtggtgtttgatagggggagttttagagcgaccggagaatgcgtggat
attttccccgcttataatgacgctgaatttattaggattgaattttttggcgatgagata
gaaaggattgctgtctttgacgctttagaaaaaaatgaaatcaagcgcttggattctgtc
atgctttatgcggccagtcagtttgccgtagggagtgagagattgaatttagccattaaa
agcattgaagatgaactcgctttaagattgaaattttttaaagagcaggataaaatgctt
gaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatgattagcgcaaccggt
gtgtgcaagggcattgaaaattacgcgcgccattttacaggcaaagcccctaatgaaacg
cctttttgtttgtttgattatttagggatatttgagcgggagtttttagtcattgtggat
gaaagccatgtgagtttgccgcagtttggggggatgtatgcaggggatatgagcaggaaa
agcgttttagtggaatatggttttagattgcctagcgctttagacaaccgccctttaaaa
tttgatgaatttatccataaaaattgccagttcctttttgtgtccgctacgcccaataag
ctagaattagagctttccaaaaagaatgtcgctgagcaaatcattcgccctacagggctt
ttagaccctaaatttgaagtgcgagacagcgataagcaagtccaggatttatttgatgaa
atcaagttagtggtggctagagatgaaagggtgcttatcaccacgctcactaaaaaaatg
gcagaagaattgtgcaaatattatgctgaatggggcttgaaagcgcgttacatgcatagt
gaaattgatgcgattgaaagaaatcacatcatccgctctttaaggcttaaagaatttgac
attttaatagggattaatcttttaagagaagggctggatttgcctgaagtctctttagta
gcgatcatggatgcggataaagaagggtttttaaggagtgaaacaagcctcattcaaacc
atggggcgagccgctagaaacgccaatggcaaggttttattatacgctaaaaaaatcact
caaagcatgcaaaaagcctttgaaattacaagctacaggcgcgctaaacaagaagaattt
aataagcttcatcatatcaccccaaaaaccgttactcgcgctttagaagaggagttgaaa
ttaagagaggttaaaatcgctaaagccttaaaaaaggacaaaatccctaaaagcgaaagg
gaaaaaatcattaaagaattggataaaaaaatgcgagaatgcgcgaaaaatttggatttt
gaagaagcgatgcgtttgagagacgaaatcgctaaactaagaacgctttaa
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