Helicobacter pylori OK310: HPOK310_0101
Help
Entry
HPOK310_0101 CDS
T02542
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hpyl
Helicobacter pylori OK310
Pathway
hpyl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hpyl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPOK310_0101 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpyl03021
]
HPOK310_0101 (rpoD)
Transcription machinery [BR:
hpyl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPOK310_0101 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
BAM97529
LinkDB
All DBs
Position
complement(100269..102284)
Genome browser
AA seq
671 aa
AA seq
DB search
MKKKANEEKAPKKNKTEATQENKAKENKIKESKIKETKTKESKIKEIKAKEPVPVKKLSF
NEALEELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLNA
IDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIE
LSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDPKK
DDDSEEYEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALEAPVDEKEDELVRL
LTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLI
ANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEILE
QIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEK
GFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVV
AEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQ
IESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQ
YGRILRNYLRI
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagccccaaaaaaaaacaaaacagaagccacacaa
gaaaataaagccaaagaaaataagatcaaagagagcaaaattaaagaaactaaaaccaaa
gaaagcaaaattaaagaaattaaagcgaaagaacctgttcctgttaaaaagcttagtttt
aatgaagcgttagaagaattgttcgccaattccttaagcgattgcgtttcttatgagtct
atcattcaaatcagtgcgaaagtccccactctagcccaagtcaaaaaaatcaaagaattg
tgccaaaaataccaaaagaaattagtcagctcttcagaatacgctaaaaaactcaatgcg
attgacaagattaaaaaaactgaagaaaaacaaaaagttttagatgaagaattagaagat
ggctatgactttttgaaagaaaaggattttttagagtggagcaggagcgatagcccggtg
cgcatgtatttgcgcgaaatgggggatataaaacttttaagcaaagatgaagagattgaa
ttgagcaagcaaatccgcttgggcgaagacattattttagacgcgatttgttcggtgccg
tatttgattgattttatctatgcgtataaagacgctttaatcaatcgtgaaagaagggtt
aaagagcttttcaggagctttgatgatgacgatgaaaatagcgtgagcgatcctaaaaaa
gatgacgacagcgaagaatatgaagaaaacgaagaaaggaaaaaagtcgtttctgaaaaa
gacaggaagcgtgtagaaaaggttcaagaaagctttaaagccctagataaggctaaaaaa
gaatggctcaaagcccttgaagcccctgtagatgaaaaagaagatgagctagtgcgttta
ttgaccctagcttacaaacgccaaacgctcaaagacagactctatgatttagagcctacc
agcaaactgattaatgaattagtcaaaacgatggaaaccactttaaaaagcggcgatggg
tttgaaaaagagttgaaacgcttggaatacaaactgcccttattcaatgacactttgatc
gctaaccataaaaaaatccttgctaatatcactaacatgactaaggaggatattatcgct
caagtgccagaagcgactatggtgagcgtgtatatggatcttaaaaagctttttttgact
aaagaagcgagcgaagagggctttgatttagaccctaacaagctaaaagaaattttagag
caaatcaaaagggggaaattgatttccgatcgcgctaaaaacaaaatggctaaatccaat
ttaaggttggtggtgagcatcgctaaacgattcacgagcagaggcttgccattcttggat
ttgattcaagagggtaatattggcttgatgaaagcggtggataagtttgagcatgaaaag
ggcttcaagttttctacctatgcgacttggtggatcaaacaagctatcagcagagccata
gccgatcaagcccgcactatccgcatccccattcacatgattgatacgatcaatcgcatc
aataaagtcatgcgcaaacacattcaagaaaacggcaaagagcctgatttggaagtggtg
gctgaagaagtggggctttcgttagataaagtgaagaatgtgattaaggttactaaagag
cctatcagtttggaaaccccagtcggcaatgatgatgacggcaaatttggggatttcgtg
gaagataaaaatatcgttagctccattgatcacatcatgcgcgaagatttgaaagcgcaa
attgaaagcgttttggatcagttgaatgagcgagaaaaagcggtgattcgcatgcgtttt
gggcttttagacgatgaaagcgatcgcactttagaagaaatcggcaaggaattgaatgtt
actagagaaagggtgcgccagattgaaagctctgcgattaaaaaattgagaagcccgcaa
tacgggcgcattttaagaaactatttgcgcatttga
DBGET
integrated database retrieval system
