Helicobacter pylori OK310: HPOK310_0786
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Entry
HPOK310_0786 CDS
T02542
Symbol
cagA
Name
(GenBank) cag pathogenicity island protein
KO
K15842
cytotoxicity-associated immunodominant antigen
Organism
hpyl
Helicobacter pylori OK310
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CagA_N
CagA
Motif
Other DBs
NCBI-ProteinID:
BAM98214
LinkDB
All DBs
Position
complement(820856..824506)
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AA seq
1216 aa
AA seq
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MTNETIDQTITPDQTDFVPQRFINNLQVAFIKVDSAVASFDPDQKPIVDKNDRDNRQAFE
KISQLREEYANKAIKNPTKKNQYFSDFINKSNDLINKDNLIAVDSSVESFRKFGDQRYQI
FTSWVSLQKDPSKINTQKIRDFMENIIQPPISDDKEKAEFLRSAKQSFAGIIIGNQIRSD
QKFMGVFDESLKERQEAEKNAEPAGGDWLDIFLSFVFNKKQSSDLKETLDQEPVPHVQPD
IATTTTDIQGLPPESRDLLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQLLIHNNAL
SSVLMGSHNGVEPEKVSLLYGGNGGPEARHDWNATVGYKNQQGSNVATLINVHMKNGSGL
VIAGGEKGVNNPSFYLYKEDQLTGLKQALSQKEIQNKVDFMEFLAKNNARLDNLSEKEKE
KFQTEIEDFQKNPKAYLDALGNDHIAFVSKKDKKHLALVTEFGNGELSYTLKDYGKKQDK
ALDRETKTTLQGNLKHDGVMFVNYSNFKYTNASKSPDKGVGATNGVSHLEANFSKVAVFN
LPNLNNLAITSYMRRDLEGKLSAKGLSLQEANKLIKDFLNSNKELVEKALNFNKTVAEAK
NTGNYDEVKKAQKDLEKSIRKREHLEKEVTKKMENRNGNKNRMEAKAQANSQKDKIFAII
NEEAGKEARGAACVQNLKSIRMELSDKLENINKNLKDLDKSFDEFKNGKNKDFSKTEETL
KALKDSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVIQAKSDLENSIKDVIINQK
ITDKVDNLNQAVSIAKATGDFSGVEQALADLKNFSKGQLTQQAQKNEDFNTGKNSELYQS
VKNGVNGTLVGNGLSKAEATTLSKNFSDIKKELNAKLGNFNNNNNDGLKNSIEPIYAKVN
KKKAGQAASPEESIYTQVAKKVNAKIDQLNQAASGFGNVGQAGFPLKRHTKVDDLSKVGL
SANHEPIYATIDDLGGPFPLKRHTKVDDLSKVGLSANHEPIYATIDDLGGPFPLTRHTKV
DDLSKVGLSREQELTQKIDNLNQALSEAEACHFGNLEQMIDKLKDSTKKNVMNLYVESAK
KVPTSLSAKLDNYATNSHTRINSNVKNGTINEKETSMLMRKNPEWLKLVNDKIVAHNVGS
APLSAYDKIGFNQKNMKDYSDSFKFSTRLSNAVKDIKSDFVQFLTNIFSMGSYSLMKASV
EHGVKNTNTKGGFQKS
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgaaaccattgatcaaacaataacaccagatcaaacagattttgttccgcaa
cgatttatcaataatcttcaagtagcttttatcaaagttgatagtgctgtcgcttcattt
gatcccgatcaaaaaccaatcgttgataagaatgatagggataacaggcaagcttttgag
aaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaatcctaccaaaaag
aatcagtatttttcagactttatcaataagagcaatgatttgatcaacaaagacaatctt
attgctgtagattcttccgtagagagctttcggaaatttggggatcagcgttaccaaatt
tttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacccaaaaaatccga
gattttatggaaaatatcatacaaccccctatctctgatgataaggaaaaagcggagttt
ttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaaatccgatcggat
caaaaattcatgggcgtgtttgatgaatctttgaaagagaggcaagaagcagaaaaaaat
gcagagcctgctggtggggattggcttgatatttttttatcatttgtgtttaacaaaaaa
caatcttccgatctcaaagaaacgctcgatcaagaaccagttcctcatgtccaaccagat
atagccactaccaccaccgacatacaaggcttaccgcctgaatctagggatttgcttgat
gaaaggggtaatttttctaaattcactcttggtgatatggaaatgttagatgttgagggt
gtcgctgacattgatcctaattacaagttcaaccaattattgattcacaataacgctctg
tcttctgtgttaatggggagtcataatggcgtagaacctgaaaaagtttcattattgtat
gggggcaatggtggtcctgaagctaggcatgattggaacgccaccgttggttataaaaac
caacaaggcagtaatgtggccacactcattaatgtgcatatgaaaaacggcagtgggtta
gtcatagcaggtggtgagaaaggggttaacaaccctagtttttatctctacaaagaagac
cagctcacaggcttgaaacaagcattgagtcaaaaagagatccaaaacaaagtggatttc
atggaatttcttgcaaaaaacaacgctagattagataacttgagcgagaaagagaaagaa
aaattccaaactgagattgaagatttccaaaaaaaccctaaggcttatttagacgcccta
gggaatgatcatattgcttttgtttctaaaaaagacaaaaaacatttagctttagttact
gagtttggtaatggggaattgagctacactctcaaagattatgggaaaaaacaagataaa
gctttagatagggagacaaaaaccactcttcaaggtaacctaaaacatgatggcgtgatg
tttgttaattattctaatttcaaatacaccaacgcctccaagagtcctgataagggtgtg
ggtgctacgaatggcgtttcccatttggaagcaaattttagcaaggtagctgtctttaat
ttgcctaatttaaataatctcgctatcactagttatatgaggcgagacttagaaggtaaa
ctgtcggctaaaggattgtccctacaagaagctaataagctcatcaaagactttttgaac
agcaacaaagaattggttgaaaaagctttaaacttcaataaaactgtagctgaagctaaa
aacacaggcaattatgacgaagtgaaaaaagctcagaaagatcttgaaaaatctataagg
aaacgagagcatttagagaaagaagtaacgaaaaaaatggagaacagaaacggcaacaaa
aatagaatggaagcaaaagctcaagctaacagccaaaaagataagatttttgcaattatc
aatgaagaggctggtaaggaagcaagaggggccgcttgcgttcagaatcttaaaagcatc
agaatggaattgtctgataagcttgaaaacatcaacaagaatttgaaagaccttgataaa
tcttttgatgaattcaaaaatggcaaaaataaggatttcagcaagacagaagaaacgcta
aaagcccttaaagactcggtgaaagatttaggtatcaatccagaatggatttcaaaagtt
gaaaaccttaatacagctttgaatgaattcaaaaatggaaaaaataaggatttcagcaag
gtaatacaagcaaaaagcgaccttgaaaattccattaaagatgtgatcatcaatcaaaag
ataacggataaagttgacaatctcaatcaagctgtatcaatagctaaggcaacaggcgat
ttcagtggggtagagcaagcactagccgatctcaagaatttctcaaaaggacaattgact
caacaagctcaaaaaaatgaagatttcaatactggaaaaaattctgaactataccaatcc
gttaagaatggtgtaaatggaaccctagtcggtaatgggttatctaaagcagaagccaca
actctttctaaaaacttttcggacatcaagaaagagttgaatgcaaaacttggaaatttc
aataacaataataatgatggactcaaaaatagcatagaacccatttatgctaaagttaat
aaaaagaaagcaggacaagcagctagccctgaagagtccatttatactcaagttgctaaa
aaggtaaatgcaaaaattgaccaactcaatcaagcagcaagtggtttcggtaatgtaggg
caagcgggattccctttgaaaaggcatactaaagttgatgatctcagtaaggtagggctt
tcagctaaccatgaacccatttacgctacgattgatgatctcggcggacctttccctttg
aaaaggcatactaaagttgatgatctcagtaaggtagggctttcagctaaccatgaaccc
atttacgctacgattgatgatctcggcggacctttccctttgacaaggcatactaaagtt
gatgatctcagtaaggtagggctttcaagggagcaagaattgactcagaaaattgacaat
ctcaaccaggcgctatcagaagctgaagcatgtcattttggcaacctagagcaaatgata
gacaagctcaaagattctacaaaaaagaatgttatgaatctatatgttgaaagtgcaaaa
aaagtgcctactagtttgtcagcgaaattggacaattacgctactaacagccacacacgc
attaatagcaatgtcaaaaatggaacaatcaatgaaaaagagactagcatgttaatgcga
aaaaaccctgagtggcttaagctcgtgaatgataagatagttgcgcataatgtgggaagt
gctcctttgtcagcgtatgataaaattggattcaaccaaaagaatatgaaagattattct
gattcgttcaagttttccaccaggttgagcaatgccgtaaaagacattaagtctgacttt
gtgcaatttttaaccaatatattttctatgggatcttacagcttgatgaaagcaagtgtg
gaacatggagtcaaaaatactaatacaaaaggtggtttccaaaaatcttaa
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integrated database retrieval system
