Helicobacter pylori OK310: HPOK310_0863
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Entry
HPOK310_0863 CDS
T02542
Symbol
rep
Name
(GenBank) rep helicase, single-stranded DNA-dependent ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpyl
Helicobacter pylori OK310
Pathway
hpyl03420
Nucleotide excision repair
hpyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOK310_0863 (rep)
03430 Mismatch repair
HPOK310_0863 (rep)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyl03400
]
HPOK310_0863 (rep)
Enzymes [BR:
hpyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOK310_0863 (rep)
DNA repair and recombination proteins [BR:
hpyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOK310_0863 (rep)
MMR (mismatch excision repair)
Other MMR factors
HPOK310_0863 (rep)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
AAA_11
Viral_helicase1
AAA_30
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAM98291
LinkDB
All DBs
Position
918196..920226
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AA seq
676 aa
AA seq
DB search
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN
KASNEMIARVAKYSKTSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN
ALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAAFYENILDEFENTK
KKHNYIDYNDLLLLFKQAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYD
QSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEV
VKSGHFNKPALLNYSDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVP
SKRKGSASFFESKEVALALDICALIFNPKDIMAAIHVLSHISDIGSNTAKDIHEALMLLG
NGDLKSALIQPNKETKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPK
ISLNGAKMLSDFFILYTKAPTHSPRALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFK
KLQAQKRFHEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKD
VYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHK
PSVFLYEAGLLKPDLK
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaaactttgcaattaaaccctgagcaactcaaagcggccaaggctttgaaaggg
tataatttagtgattgcgagcgctggcacaggaaagacttctacgattgtggggcgcatt
ttatacctgcttgataacggcatcaagcctgaagaaatcttgcttttgactttcaccaat
aaagcgagtaatgaaatgattgccagggtggctaaatattccaaaacaagctccaaaatt
gaagcaggcactttccatgcggtggcgtatcgctatttaaaagagcattaccctaattta
agcctaaagcaacctaaagaattgaaaaaacttttagaaagcattgtggataccaaaaac
gcgctaacagatgacgataaaaagccctacacttcgcagcatctctacgccctctattct
ctttataccaacgctctaaaacaagaagattttagcgcatggctttctaataaaaaccct
gaacacacgccatacgccgccttttatgaaaacattttagacgaatttgaaaacaccaaa
aaaaagcataattatattgactataacgacttactgctgctatttaaacaagcgatgcta
gaaagacctagcccttataaagaagtgctttgcgatgagtttcaagacactaacccctta
caagaatccattttagacgctatcaaccctcctagtttgttttgcgtgggcgattacgat
cagagcatttacgcttttaatggggcggatatttctatcatttctaatttcacccaaaaa
tacaaaaacgcccaggttttcacgctcaccaaaaactaccgctcttctaaagagatttta
gatctcgctaatcaagtgatacagcataatgagcgcatttaccctaaaaatttagaagtg
gtgaaatcagggcatttcaataagcctgcgcttttaaattacagcgataatatcgcgcaa
tgccaagacatcgctaaacgcattgtcatgcgaaagaattttaaagaagtggcagtgatt
tttaggaataacgcaagcgcggatcaattagaagccgctttaagatcccacaatgtgcca
agcaaaagaaaagggagtgcgagcttttttgaatccaaagaagtggcgttagcgttagac
atttgcgcgctcatctttaaccctaaagacattatggcagcaatccatgttttaagtcat
atcagcgatattggctctaacaccgctaaagacattcatgaggctttaatgcttttaggc
aatggcgatctcaaatcggctttaatccagcctaataaagaaaccaaaatttacacgaag
aaaaaagaaatcacctctatggggctttttgaagaaatttttgccctagaaaacagctca
aggtttaatagcgtgatagataaagcgtttcattcgcacccggtattgatgcaccctaaa
atctcactcaatggggctaaaatgcttagcgattttttcattctttataccaaagcccct
acccattcccctagagctttaatcaaacacattctagagagcgcgttttttcaaaccttt
aaaacacgccttttaaaagagcgatccaaaaataaggacggctcttataacgagtttaaa
aaactccaagcgcaaaaacgcttccatgaaaaaatggacttgctgagttctttggcgaaa
aattaccaaaatttagggcgttttttaaacggcactttaataggctctagtgaagccacg
caaggcgagggcgtgaatctattgagcgtgcatgcttctaaaggcttggaatttaaagat
gtttatattatagatttaatggagggccgtttccctaaccacaagctcatgaataccggt
gggggcattgaagaagagcggcggcttttttatgtcgctatcacaagggctaaggaaaat
ttatggctttcttatgcgaaaaacgaattgagagaaaacgccaaacctaaagagcataaa
ccctcggtgtttttgtatgaagcggggcttttgaaacccgatttaaaataa
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