Helicobacter pylori OK310: HPOK310_1108
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Entry
HPOK310_1108 CDS
T02542
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hpyl
Helicobacter pylori OK310
Pathway
hpyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPOK310_1108 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyl03019
]
HPOK310_1108 (pnp)
03016 Transfer RNA biogenesis [BR:
hpyl03016
]
HPOK310_1108 (pnp)
Enzymes [BR:
hpyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPOK310_1108 (pnp)
Messenger RNA biogenesis [BR:
hpyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPOK310_1108 (pnp)
Transfer RNA biogenesis [BR:
hpyl03016
]
Prokaryotic type
tRNA degradation factors
HPOK310_1108 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
BAM98536
LinkDB
All DBs
Position
complement(1204662..1206728)
Genome browser
AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLSHIAPIKSVSACRIARIDNEFIINPSISLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGII
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESGLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQNHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEIKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIKCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaactctagtaacaaaaccgaagaattcgctctcaaacaagtg
gccaaacaagccaccagctctcttatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgcgtggaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggctttgttaaaagagaaggcagagcg
caagattttgaaatcttaacctctaggcttatagataggactttacgccctttattccct
aaagactaccgctaccctacacagatcactttaatggttttaagccatgatattgaaaat
gatttgcaagtttctgctttaaacgctgcttcagccgctctctttttatcccatatcgct
cccattaaaagcgtgagcgcttgcaggattgctaggattgataacgaatttatcattaac
cctagcataagccttttgaatcaatccagtttggatttgttcgtgtctggcacaaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgcttttcaaagagagccaaggaataatt
tttaatgaaaggctgttagatctattaaaaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aaaactgagataaggcgcatgatcattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcggtttgctccctatggcgcatagctccatt
ttattcactagggggcaaacgcaaagtttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctattaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggcgaagcgagttctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagagctttagaaacgagtattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatctagttgct
ggggtggctatgggcatggtgagcgaagggcaaaatcacgccattttaagcgatattagc
ggcttagaagacgcagaaggcgatatggattttaagattgctgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccaattagaggttttataccaggct
ttactccaagctaaaaaagcacgagagcatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgattaatttttcccatttgcccacaacggagatttttaatgtcgcgcctgat
aaaattgtagaaattatcggtcaaggggggcgtgtgatcagagagatagtagaaaagttt
gagattaaaattgatttgaataaaccgagcggtgaagtgaaaatcatggggaataaagag
cgggttttaaagactaaggaatttattttaaactatttgcattctttggatcaagaattg
gagcaatacgctattgatgaggtgttagaagctcaagtgaagcgaatcgtggattttggg
gcgtttttaagcttgcctaagggaggcgaaggcttgttaagaaagcaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcaaatgcagggtgattagtttcaataag
ggtaaaatcgccttggatttggcttaa
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