Helicobacter pylori OK310: HPOK310_1308
Help
Entry
HPOK310_1308 CDS
T02542
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hpyl
Helicobacter pylori OK310
Pathway
hpyl03030
DNA replication
hpyl03430
Mismatch repair
hpyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPOK310_1308 (dnaE)
03430 Mismatch repair
HPOK310_1308 (dnaE)
03440 Homologous recombination
HPOK310_1308 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpyl03032
]
HPOK310_1308 (dnaE)
03400 DNA repair and recombination proteins [BR:
hpyl03400
]
HPOK310_1308 (dnaE)
Enzymes [BR:
hpyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPOK310_1308 (dnaE)
DNA replication proteins [BR:
hpyl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPOK310_1308 (dnaE)
DNA repair and recombination proteins [BR:
hpyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPOK310_1308 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Arm-DNA-bind_5
Motif
Other DBs
NCBI-ProteinID:
BAM98736
LinkDB
All DBs
Position
complement(1395193..1398828)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSSEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAQNEGLSFEDDASYFAYKAREGLKERLVLVPKEKHDQYKERLEKEIGVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
VSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKGDYKSLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLSALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPEKQKEEVREIPPIEILA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKGKQFKIQSDLMVNEKIKD
DFKGLEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaataaagccttcacgcatctgcacttgcacacggaatattcgcttttagac
ggggcgaacaagattaaaattctagctaaacgcattaaagaattgggcatgaaaagcgtg
agcgtaactgaccatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gaaggcattaagcctatcatcggcatggaagcgtatatccataatgacgacaacctttct
agcaaagaaaccaagcaacgcttccatttgtgcttattcgctaaaaaccaagagggctat
gaaaatttgatgttcttaagctctatggcgtatttagaagggttttattatttcccgcgc
atcaataaaaagcttttaagggagcattctaaaggcattatcgcttctagcgcgtgcttg
caaggggaagtcaattaccatttgaatactcataatgagagaaatcgcaagtatggggct
aaaggctatgatgaagccaaaaaaatcgcttgcgaataccaagagatttttgaagacgat
ttttatttagaaatcatgcgccatggcattttagatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacagggttaaaaatcattgccaccaacgacacccactacacc
atgcctaatgacgccaaagctcaagaagtggcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacattaagtcttccgaagaa
atggcaaagctgtttgcagatataccagaagctttagaaaacacccaagaaatcgctgat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccctccaagc
ttcaaattcactaaagcttacgctcaaaatgaggggctgagttttgaagatgacgcttct
tattttgcctataaggctagagagggcttgaaagagcgcttggttttagtgcctaaagaa
aagcatgatcaatacaaagaacgattggaaaaagaaattggagtcattacgaacatgaaa
ttcccggggtatatgctgattgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtagggcctggtagggggagtgcggccgggagtttggtggcttttgctttaaaaatc
accgatattgaccccttgaaatacgatttgctctttgaaaggtttttaaaccctgaaaga
gtcagcatgcctgatattgatacggatttttgccagcgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataagatg
ttggctaaaggcgtgatcagagatgtcgcaagggttttggacatgccctataaagaagcc
gatgattttgccaaactcatacctaatcgcttaggcatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattagtagag
agtaatgaattagccaaacaagtgtgggagtattcgctcaatttagagaatttgaatcgc
aacgcaggcgtgcatgccgcagccttagtggtggatagccaaaaagaattgtggcacaaa
acccctttatttgcctctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagagccggtggatttgattaagtttgactttttggggcttaaaaccttgaccgtgatt
gatgatgcgcttaaaatcattaaaacgcagcacaaaattagcgtggattttttatcgttg
gatatggacgatccgaaagtgtataaaacgatccaaagcggggatacggtggggatattc
cagattgaatccgggatgtttcaagggcttaacaaacgcttaaggccttcaagctttgaa
gacattatcgccattattgcgctaggcagaccagggcctatggaatcaggcatggtagat
gattttgtgaacagaaagcatggcattgagcctatcgcttatgcgtttaaagaattagag
ccgattttaaagcctacttacggcacgatcgtctatcaagagcaagtgatgcaaatcgtg
caaactattggcggttttagtttgggtgaagcggatttgatccgccgcgctatggggaaa
aaagacgctcaaatcatggcggacaataaggctaagtttgtagaaggcgctaaaaattta
gggcatgatggccaaaaggcggctaatttgtgggatctgatcgttaaatttgccggctat
ggtttcaacaaatcgcattcagccgcctatgcgatgatcactttccaaacggcatattta
aagacttattacaagcatgagttcatggcggcgatgctcactagcgaatccaataagatt
gaatccgtggcgcgctacattgatgaggttagggctttagaaattgaagtgatgcccccc
cacatcaattcttctatgcaagatttcagcgtggcggagtttaaaaatcaaaagggcgag
ctagaaaagaaaatcgtgtttggtttaggagcgattaaaggggttgggggtgagccgatt
aaaaacatcattgaagaaaggactaagggggattataagagtttagaagattttatttca
cgggtggatttttctaaactcactaaaaaatctttagagccattggtgaaatcagggagc
ttggataatttaggctacacccgaaaaaccatgctcgctaacttggatctgatctgtgat
gctgggcgcgctaaagacaaggctaatgaaatgatgcaagggggtaactccctttttggg
gcaatggatggcgggacaaaagagcaggttattttggacatgattgatttgggcgaacat
gacgctaaaacgcttttagaatgcgaatacgagactttaggcatccatgtttcaggcaat
cccttagacgagtttaaagaagaaattaagggctttaaaaatttagtcaaaagtattgat
attgaagagttagaaattggctcgcaagcttatttgctgggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaagccttacggcacagcggacattttggacagatac
ggcaagtttgagctcatgctgtttgaaaagcaattgagcgctttagaagagttggatatt
aataagcctttagtgtttaaatgcaagattgaagagcaagaagaagtggcacgattaagg
ctttttgaaatcttggatttagagagcgctagggaggttaaaatccctaaagcccgttat
aaagaccctgaaaagcaaaaagaagaggtgcgcgaaatcccccccattgaaatactcgcc
tccagttcttgctctttagcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctttaaaacaccagggcaaacgccccttgtatttgatcatcaaa
gataagggcaagcaattcaaaatccaaagcgatttaatggtaaatgaaaagattaaggac
gattttaaagggttagagtggagggatttagcttga
DBGET
integrated database retrieval system
