Helicobacter pylori OK113: HPOK113_0565
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Entry
HPOK113_0565 CDS
T02510
Symbol
cagA
Name
(GenBank) cag pathogenicity island protein
KO
K15842
cytotoxicity-associated immunodominant antigen
Organism
hpyo
Helicobacter pylori OK113
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CagA_N
CagA
WH_CYT4
Motif
Other DBs
NCBI-ProteinID:
BAM96473
LinkDB
All DBs
Position
597443..600991
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AA seq
1182 aa
AA seq
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MTNETIDQTTTPDQTPNQTDFVPQRFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNR
QAFEKISQLREEFANKAIKNPAKKNQYFSNFISKSNDLIDKDSLIDIGSSIKSFQKFGTQ
RYQIFMNWVSHQKDPSKINTQRIRSFMENIIQPPISDDKEKAEFLRSAKQTFAGIIIGNQ
IQSDQKFMGVFEESLKERQEAEKNGEPTGEPTGGDWLDIFLSFVFNKKQSSDLKETLNQE
PVPHVQPDIATTTTDIQSLPPEARDFLDERGNFSKFTLGDMEMLDVEGVADIDPNYKFNQ
LLIHNNALSSVLMGSHNGIEPEKVSLLYGGNGGPEARHDWNATVGYKNQQGDNVATLINV
HMKNGSGLVIAGGEKGVNNPSFYLYKEDQLTGLKQALSQEEIQNKVDFMEFLAQNNAKLD
NLSKKEKEKFQNEIEDFQKDSKAYLDALGNDHIAFVSKKDKKHLALVAEFGNGELSYTLK
DYGKKQDKALDRETKTTLQGNLKHDGVMFVNYSNFKYTNVSKSPDKGVGTTNGVSHLEAN
FSKVAVFNLPNLNNLAITNYIRRDLEDKLLAKGLSPQEANKLIKDFLNSNKELVEKALNF
NKTVAEAKNTGNYDEVKKAQKDLEKSLRKREHLEKEVTKKLESRNDNKNRMEAKAQANSQ
KDKIFALINQEASKEARAVAFDQNLKSIRSELFDKLENINKNLKNFGKSFDELKNGKNND
FSKAEETLKALKDSVKDLGINPEWISKVENLNTALNEFKNGKNKDFSKVTQAKSDLENSI
KDVIINQKITDKVDNLNQAVSIAKATSDFSRVEQALAELKNLSLDLGKNSDLQKSVKNGV
NGTLVGNGLSKTEATTLTKNFSDIRKELNEKLFGNSNNNNNGLKNSTEPIYAKVNKKKTG
QAASPEEPIYAQVAKKVSAKIDQLNEATLAINRKIDRINKIASAGKGVGGFSGAGRSASP
EPIYATIDFDEANQAGFPLRRSAAVNDLSKVGLSREQELTRRIGNLNQAVSEAKTCHFDN
LDQMIDKLKDSTKKNVMNLYVESAKKVPTSLSAKLDDYATNSHTRINSNVKNGAINEKAT
GMLTQKNPEWLKLVNDKIVAHNVGSVSLSEYDKIGFNQKNMKDYSDSFKFSTKLNNAIKD
IKSGFVQFLTNTFSTASYYCLAEENAKHGIKNANTKGGFQKS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgaaaccattgatcaaacaacaacaccagatcaaacaccaaaccaaacggat
tttgttccgcaacgatttatcaataatcttcaagtagcttttcttaaagttgataacgct
gtcgcttcatttgatcctgatcaaaaaccaatcgttgataagaatgatagggataacagg
caagcttttgagaaaatctcgcaactaagggaggaattcgctaataaagcgatcaaaaat
cctgccaaaaagaatcagtatttttcaaactttatcagtaagagcaatgatttaatcgac
aaagacagtctcattgatataggttcttccataaagagctttcagaaatttgggactcag
cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccatctaaaatcaacacc
caaagaatccgaagttttatggaaaatatcatacaaccccctatctctgatgataaagaa
aaagcggagtttttgaggtctgccaaacaaacttttgcaggaattatcataggaaaccag
atccaatcagatcaaaaattcatgggcgtgtttgaagaatctttgaaagaaaggcaagaa
gcagaaaaaaatggagagcctactggagagcctactggtggggattggcttgatattttt
ttatcatttgtgtttaacaaaaaacaatcttccgatcttaaagaaacactaaatcaagaa
ccagttcctcatgtccaaccagatatagccactaccaccactgacatacaaagcttaccg
cctgaagctagggattttcttgatgaaaggggtaatttttctaaattcactcttggtgat
atggaaatgttggatgttgagggcgtcgctgatattgatcctaattacaagttcaaccaa
ttattgattcacaataacgctctgtcttctgtgttaatggggagtcataatggcatagaa
cctgaaaaagtttcattattgtatgggggcaatggtggccctgaagctaggcatgattgg
aacgccaccgttggttataaaaaccaacaaggcgacaatgtggctacactcattaatgtg
catatgaaaaacggcagtgggttagtcatagcaggtggtgagaaaggggttaacaaccct
agtttttatctctacaaagaagaccagctcacaggcttgaaacaagcattgagccaagaa
gagatccaaaacaaagtagatttcatggaatttcttgcacaaaacaatgctaaattagat
aacttgagcaagaaagagaaagaaaaattccaaaatgagattgaagattttcaaaaagac
tctaaggcttatttagacgccctagggaatgatcacattgcttttgtttctaaaaaagac
aaaaaacatttagctttagttgctgagtttggtaatggggaattgagctacactctcaaa
gattatgggaaaaaacaagataaagctttagatagggagacaaaaaccactcttcaaggt
aacctaaaacatgatggcgtgatgtttgttaattattctaatttcaaatacaccaacgtc
tccaagagtcctgataagggtgtaggcactacgaatggcgtttcccatttggaagcaaat
tttagcaaggtagctgtttttaatttgcctaatttaaataatctcgctatcactaattat
ataaggcgagatttagaagataaactgttggctaaaggattgtccccacaagaagctaat
aagctcatcaaagactttttgaacagcaacaaagaattggttgaaaaagctttaaacttc
aataaaactgtagctgaagctaaaaacacaggcaattatgacgaagtgaaaaaagctcag
aaagatcttgaaaaatctctaaggaaacgagagcatttagagaaagaagtaacgaaaaaa
ttggagagcagaaacgacaacaaaaatagaatggaagcaaaagctcaagctaacagccaa
aaagataagatttttgcacttatcaatcaagaggctagtaaggaagcaagagcggtcgct
ttcgatcagaatcttaaaagcatcaggagcgaattgtttgataaacttgaaaatatcaac
aagaatttgaaaaactttggcaaatcttttgatgaactcaaaaatggcaaaaataatgat
ttcagcaaggcagaagaaacgctaaaagcccttaaagactcggtgaaagatttaggcatc
aatccagaatggatttcaaaagttgaaaaccttaatacagctttgaatgaattcaaaaat
ggcaaaaataaggatttcagcaaggtaacgcaagcaaaaagcgaccttgaaaattccatt
aaagatgtgatcatcaatcaaaagataacggataaagttgacaatctcaatcaagctgta
tcaatagctaaagcaacgagtgatttcagtagggtagagcaagcgctagccgaactcaaa
aacttgtcattggatcttggaaaaaattctgatctacaaaaatccgttaaaaatggtgta
aatggaaccctagtcggtaatgggttgtctaaaacagaagccacaacgctcaccaaaaat
ttttcggacatcaggaaagaattgaacgagaaattatttggaaattccaataacaataat
aatggactcaaaaacagcacagagcctatttacgctaaagttaataaaaagaaaacagga
caagcagctagccctgaagagcctatttacgctcaagttgccaaaaaggtgagtgcaaaa
attgaccaactcaacgaagctacattagcaataaatagaaaaattgaccggattaacaaa
attgcatcagcaggtaaaggagtgggcggtttcagtggagcagggcgatcagctagccct
gaacccatttacgctacaattgattttgatgaggcaaatcaagcaggcttccctttgaga
agaagtgctgcagttaatgatctcagtaaagtagggctttcaagggaacaagaattgact
cgtagaattggcaatctcaatcaggcggtatcagaagctaaaacatgtcattttgacaac
ctagatcaaatgatagacaagctcaaagattctacaaaaaagaatgttatgaatctatat
gttgaaagtgcaaaaaaagtgcctactagtttgtcagcgaaattggacgattatgctact
aacagccacacacgcattaatagcaatgtcaaaaatggagcaatcaatgaaaaagcgact
ggtatgctaacgcaaaaaaaccctgagtggctcaagctcgtgaatgataagatagttgcg
cataatgtgggaagcgtttctttgtcagagtatgataaaattggcttcaaccagaagaat
atgaaagattattctgattcgttcaagttttccaccaagttgaacaatgctataaaagac
attaagtctggctttgtgcaatttttaaccaatacattttctacagcatcttattactgc
ttggcggaagaaaatgcgaagcatggaatcaaaaatgctaatacaaaaggtggtttccaa
aaatcttaa
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integrated database retrieval system
