Helicobacter pylori OK113: HPOK113_0920
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Entry
HPOK113_0920 CDS
T02510
Symbol
rep
Name
(GenBank) rep helicase, single-stranded DNA-dependent ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpyo
Helicobacter pylori OK113
Pathway
hpyo03420
Nucleotide excision repair
hpyo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOK113_0920 (rep)
03430 Mismatch repair
HPOK113_0920 (rep)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyo03400
]
HPOK113_0920 (rep)
Enzymes [BR:
hpyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOK113_0920 (rep)
DNA repair and recombination proteins [BR:
hpyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPOK113_0920 (rep)
MMR (mismatch excision repair)
Other MMR factors
HPOK113_0920 (rep)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
AAA_11
Viral_helicase1
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAM96828
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All DBs
Position
971148..973175
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AA seq
675 aa
AA seq
DB search
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTN
KASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKN
AIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSHKNPEHTPYAAFYENILDEFENTKK
KHNYIDYNDLLLLFKQAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQ
SIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVV
KSGHFNKPALLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPS
KRKGSASFFESKEVALALDICALIFNPKDIMAAIHVLSHISDIGSNTAKDIHEALILLGN
GDLKLALIQPDKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKI
SLNGAKMLSDFFILYTKAPTHSPSTLIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKK
LQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDV
YIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKP
SVFLYEAGLLKPDLK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaaactttgcaattaaaccccgagcaactaaaagcggccaaggctttaaaaggg
tataatttagtgattgcgagcgctggcacaggaaagacttctacgattgtggggcgcatt
ttatacctgcttgataatggcatcaagcctgaagaaatcttgcttttgactttcaccaat
aaagcgagtaatgaaatgattgctagggtggctaaatattccaagttaagctccaaaatt
gaagcgggcactttccatgcggtggcgtatcgctatttaaaagagcattaccctaattta
agcctaaagcaacctaaagaattaaaaaaacttttagaaagcattgtggataccaaaaac
gccatagacgacgataaaaagccctacacttcacagcatctctacgccctctattctctt
tataccaacgctctaaaacaagaagattttagcgcatggctttctcataaaaaccctgaa
cacacgccatacgccgccttttatgaaaacattttagacgaatttgaaaacactaaaaaa
aagcataattatattgactataacgacttactgctattatttaaacaagcgatgctagaa
agacctagcccttataaagaagtgctttgcgatgaatttcaagacactaaccccttacaa
gaatccattttagacgctatcaaccctcccagtttgttttgcgtgggcgattacgatcag
agcatttacgcttttaatggggcggatatttctatcatttctaatttcactcaaaaatac
aaaaacgcccaggttttcacgctcaccaaaaactaccgctcttctaaagagattttagat
ctcgctaatcaagtgatacagcataatgagcgcatttaccctaaaaatttagaagtggtg
aaatcagggcatttcaataagcctgcacttttaaattacaacgacaatatcgcgcaatgc
caagacatcgctaaacgcattgtcatgcgaaagaattttaaagaagtggcagtgattttt
aggaataacgcgagcgcggatcaattagaagccgctttaagatcccacaatgtgccaagc
aaaagaaaagggagcgcgagcttttttgaatccaaagaagtggcgttagcgttagacatt
tgcgcgctcatctttaaccctaaagacattatggcagcaatccatgttttaagccatatc
agcgatattggctctaacaccgctaaagacattcatgaggccttaatacttttaggcaat
ggcgatctcaaattggctttaatccagcctgataaagaagccaaaatctacacgaagaaa
aaagaaatcacctctatggggctttttgaagaaatttttgctctagaaaacagctcaagg
tttaatagcgtgatagataaagcgttccattcgcacccggtattgatgcaccctaaaatc
tcactcaatggggctaaaatgctcagcgattttttcattctttataccaaagcccctacc
cattcccctagcactttaatcaagcacattctagaaagcgcgttttttcaaacctttaaa
acacgccttttaaaagagcgctccaaaaataaggacggctcttataacgagtttaaaaaa
ctccaagcgcaaaaacgcttcaatgaaaaaatggacttgctgagttctttggcgaaaaat
taccaaaatttagggcgttttttaaacggcactttaataggctccagtgaagccacgcaa
ggcgagggcgtgaatttattgagcgtgcatgcttctaaaggattagagtttaaagatgtt
tatattatagatttaatggagggccgtttccctaaccacaaactcatgaataccggtggg
ggcattgaagaagagcggcggcttttttatgtcgctatcacaagggctaaggaaaattta
tggctttcttatgcgaaaaacgaattgagagaaaacgccaaacctaaagagcataaaccc
tcggtgtttttgtatgaagcggggcttttgaaacctgatttaaaataa
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