Helicobacter pylori OK113: HPOK113_1487
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Entry
HPOK113_1487 CDS
T02510
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hpyo
Helicobacter pylori OK113
Pathway
hpyo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hpyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPOK113_1487 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpyo03400
]
HPOK113_1487 (mfd)
Enzymes [BR:
hpyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPOK113_1487 (mfd)
DNA repair and recombination proteins [BR:
hpyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPOK113_1487 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
BAM97395
LinkDB
All DBs
Position
1582777..1585776
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYRALNKGFDYQILACKDFKESELAKEVISYFKPNTKAILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDMECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLHAYK
SVISPRALEEIQELASLNELDNERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISALEKSHIECVIAPFVLNFKTPDEIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVLTKDRLGKGSFLKLKAKVKTKLLEIASKIIELAAERNLILGKKMDTHLAELEVFKSH
AGFEYTSDQEKAIAEISKDLSSQRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVGLGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINAHESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIACHDLEIRGGGNLLG
QDQSGHIKNIGYVLYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKTDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSGEKKESLKAPSKDDNDILETLLKHLRAQISLKWH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatagagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagccattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagaaaac
aagcaagaagcgatcattattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaagatttaaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacatggagtgtgagagcattaaggaatttgaccccaccactcaaatgagcctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttaaacgaacaatct
tataaggatttgaaaaccaaagtggagcaaagcccattaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaagcaaacgatttgttgcatgcctataaa
agtgttataagccctagagctttagaagaaattcaagaattagcgagcttaaacgaattg
gataatgagcgtttcaaatttttaaaagttttagaaaacccgcaaggctatgaagattta
gaaatccatgcgcatgccctagaaagctttatagctttgcattcaaatcgtaaaatcacg
ctcctagcccctaataaaacgattttagacaatgcgataagcgcgcttgaaaaaagccat
attgaatgcgtcatcgccccctttgtgttaaactttaaaacccctgatgagatttttatt
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattacggggtgggcgtgttttctcaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttatttgggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaagc
gatagcgtgctaactaaagatcggctagggaaagggagttttctcaaactgaaagctaag
gttaaaactaagcttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggacacgcatttggcggagttggaagtctttaaatcgcat
gcgggatttgaatacacaagcgatcaagaaaaagccatcgctgaaatttcaaaggattta
agttctcagagagtgatggacagattgttgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctagtcgtg
cctaccactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtgggattagggctgattgatgttcttgtaggcacgcatgcgattttgggcgcgaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttaagcatgtccgctacgcctatcccg
cgcactttaaacatggcactctctcaaattaaaggcatcagctctttaaaaatcccgccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattgcgccgtaatgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgctcatgagagcgaagaaatcatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataacgcgcaaaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaggaaggcttttgctatttcctcatagaagatcaaaaa
agtttgaatgagcaagccctaaaacgcttgctcgctttagaaaaaaattcgtatttaggc
agcggggagagtatcgcttgtcatgatttagaaatcagggggggcgggaatttgcttggg
caagatcagagcgggcatattaaaaatatcggttatgtgctctatacacgcatgcttgaa
gacgcgatttatgaattgagtggggggaaaaaaaggcttgaaaagagcgtagagatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttgtaccgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaacagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattttagccaaccagcttggcatcattaaactttctaatttcaatcaaaacatc
accattacttatagcggtgaaaagaaagaaagcttaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcgctcaaatttctttaaagtggcactaa
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