Helicobacter pylori UM032: K747_04055
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Entry
K747_04055 CDS
T02658
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hpyr
Helicobacter pylori UM032
Pathway
hpyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K747_04055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpyr03019
]
K747_04055
Messenger RNA biogenesis [BR:
hpyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K747_04055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AGL66610
LinkDB
All DBs
Position
770178..772262
Genome browser
AA seq
694 aa
AA seq
DB search
MTDNNHYENNENNENSSENPKAHHEARAGAFERFTNRKKRFRENAQKNADSSNHEVPSHH
KKERRPNKKPNHHHKAKHTPQKTRNYAQEELDNNKVEGVTEILHVNERGTLGFHKELKKG
VEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFP
KEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGL
IGSKFDEHGLKKYRSYFKIVEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHT
GDFKIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKE
AQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIE
ANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASV
SAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQ
TAISCGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTNIVQQREEV
ASAGVFAATIFVNKNKQALLESSQFSSLGLVGFKDEKHLTKEIQGGLELLLKSSNAEILN
NPKKLEDHTRNFIRKALFKKFRKYPAIICHVHAT
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgactgataacaaccattatgaaaataatgaaaacaatgaaaacagcagtgaaaaccca
aaagctcatcatgaggcgcgagccggagcgtttgagcgattcaccaaccgcaaaaagcgt
tttagagaaaacgcgcaaaaaaacgcagactcttcaaaccatgaagtgccttcacaccat
aaaaaagagcgccgccccaacaaaaaaccaaaccaccaccataaagccaaacacaccccc
caaaagactagaaattacgcccaagaagaattggataacaacaaagtagagggcgttacg
gaaattttgcatgtgaatgagagggggactttaggctttcataaggagctcaaaaagggc
gttgaagctaataacaagatccaagtggagcatttaaacccgcattataagatgaatcta
aattctaaagcgagcgttaaaatcacgcctttagggggcttgggcgagattggggggaac
atgatggtcattgaaaccccaaaaagcgcgatcgtgattgatgcgggcatgagcttccct
aaagaagggctctttggcgtggatattttaatcccggatttttcctacttgcaccaaatc
aaggacaaaatcgctggcatcatcatcacccatgcccatgaagatcacataggggccacg
ccttatttgtttaaagagttgcaattccccctttatggcacgcccttgagtttggggttg
atcgggagcaagtttgatgaacatggtttgaaaaaataccgctcgtattttaaaatcgta
gaaaagcgctgtcccattagcgtgggcgaatttatcattgaatggatccacatcacgcat
tctattattgatagcagcgctttagcgatccaaactaaagccggaactatcatccacacc
ggcgattttaaaatcgatcacaccccagtggataatctgcccactgatttgtatcgttta
gcgcactatggcgaaaagggggtgatgcttcttttaagcgattccactaactcccataaa
tccgggactacaccgagtgaaagcaccatagcgccggcttttgatacgctttttaaagaa
gcgcaagggagggtgattatgagcacattctctagcaatatccaccgggtgtatcaagcc
atacaatacggcattaaatacaaccgcaagatcgctgtgatcgggcgctctatggaaaaa
aacctagacatcgcaagagaattaggctatatccatttgccttatcaatcctttattgaa
gccaatgaagtcgctaaatatccggataatgaagttttaatcgtaacgaccggctcacaa
ggcgaaaccatgagcgcgctttatcgcatggcgactgatgaacaccgccacatttctatc
aaacccaacgatttagtcatcatctctgctaaagccattcctggcaatgaagcgagcgtt
tcagcggtattgaattttttaatcaaaaaagaagctaaagtggcttatcaagaatttgac
aatatccatgtgagcgggcatgccgcccaagaagagcaaaagctcatgttaagactcatt
aagcctaagtttttcttacccgtgcatggggaatataaccatgtcgcacgccacaagcaa
accgctatttcttgcggggtgcctgaaaaaaatatctatttaatggaagatggcgatcaa
gtggaagttggccctgcgttcattaaaaaagtaggcacgattaaaagcgggaaaagctat
gtggataaccaaagcaatttgagtattgatacaaacattgtgcaacaaagagaagaagtc
gctagtgctggggtgtttgccgctacgatttttgtgaataaaaacaaacaagcgctttta
gaaagctctcaattttctagtttagggcttgtgggctttaaagatgaaaagcatttgaca
aaagaaattcaaggaggattagagttgttattgaagtccagcaacgccgaaattttgaat
aaccctaagaaattagaagatcacacccgtaatttcatcagaaaagcgctctttaagaag
tttagaaaatacccggctatcatttgccatgtccatgccacttga
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