Helicobacter pylori SouthAfrica20: HPSA20_0274
Help
Entry
HPSA20_0274 CDS
T02807
Name
(GenBank) type III restriction enzyme, res subunit
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpys
Helicobacter pylori SouthAfrica20
Pathway
hpys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSA20_0274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpys03019
]
HPSA20_0274
03009 Ribosome biogenesis [BR:
hpys03009
]
HPSA20_0274
Enzymes [BR:
hpys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPSA20_0274
Messenger RNA biogenesis [BR:
hpys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPSA20_0274
Ribosome biogenesis [BR:
hpys03009
]
Prokaryotic type
rRNA helicases
HPSA20_0274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
AAA_30
Helicase_RecD
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AGT73516
UniProt:
T1U828
LinkDB
All DBs
Position
253918..255402
Genome browser
AA seq
494 aa
AA seq
DB search
MEFIHDDSQLPIEIDDDTYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGR
DVIAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKT
VCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGF
LDDIEEIFDYLPSEVQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYV
INEHERSEAIMRLLDTQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRT
SVMAFKKNDTDVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAI
TLVTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFE
PSQLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPSHKKTHPHEPAHSFKKGHHKDK
HPKTNRYSKKPKRH
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggaatttattcatgatgattcacaactccctatagaaattgatgatgacacctaccat
aagcctagtttcaatgatttaggcttaaaagaatcggttttaaaatccgtttatgaagcc
ggcttcacttccccaagccccattcaagaaaaggctattccggctgttttacaaggaaga
gatgttatcgcgcaagcccaaacgggcacaggaaaaaccgccgctttcgctttgcctatc
atcaataaccttaaaaacaaccacaccatagaagccttagtgatcacgcccactagagaa
ttggctatgcaaattagcgatgaaatctttaaattaggcaaacacaccaggactaaaacc
gtgtgcgtgtatggagggcagagcgttaaaaaacaatgcgaatttattaagaaaaaccct
caagtgatgatcgccacgccaggaagattattggatcatttaaaaaacgagcgcatccat
aaatttgtgcctaaagtggtcgtgctagatgaaagcgatgaaatgctggatatggggttt
ttagacgatattgaagagatttttgactacctccctagcgaagtgcagatcttgcttttt
tcagccacgatgccagagccgattaaaaggctagcggacaagattttagaaaaccccatt
aaaatccatatcgccccttctaatatcactaacactgacattactcaacgcttttatgtg
atcaacgagcatgaaagatctgaagcgatcatgcgccttttagatacccaagcacctgaa
aagagcattgttttcacgcgcactaaaaaagaggctgatgaattgcaccagttccttatt
tccaaaaattacaaaagcaccgccttgcatggggatatggatcaaagggatcggcgcact
tctgtcatggcgtttaaaaaaaatgacactgatgtgttggtggctacagatgtggcgagc
cgtgggctagacattagcggtgtaagccatgtgtttaattaccacttgcccctaaacact
gaaagctatatccatcgcattggcagaaccgggcgagcgggcaaaaaaggcatggcgatt
acgctagttacgcctttagaatacaaagaacttttacgcatgcaaaaagaaattgattca
gaaattgagctttttgaaatccccaccattaacgaaaatcaaatcatcaaaaccttgcat
gacgctaaagtgtctgaagggatcattagcctttatgaacagctcaccgaaatttttgaa
ccctctcagttggtcttaaaacttttgagtttgcagtttgaaactagcaaaattggctta
aaccagcaagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaccctctcac
aaaaaaacgcacccgcatgagccagcacactctttcaaaaagggccaccacaaagacaaa
caccctaaaacgaatcgttattccaaaaaacccaaacgccattaa
DBGET
integrated database retrieval system
