Helicobacter pylori SouthAfrica20: HPSA20_0534
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Entry
HPSA20_0534 CDS
T02807
Symbol
gyrB
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
hpys
Helicobacter pylori SouthAfrica20
Brite
KEGG Orthology (KO) [BR:
hpys00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpys03032
]
HPSA20_0534 (gyrB)
03400 DNA repair and recombination proteins [BR:
hpys03400
]
HPSA20_0534 (gyrB)
Enzymes [BR:
hpys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HPSA20_0534 (gyrB)
DNA replication proteins [BR:
hpys03032
]
Prokaryotic type
DNA Topoisomerases
HPSA20_0534 (gyrB)
DNA repair and recombination proteins [BR:
hpys03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPSA20_0534 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Peptidase_U32
Motif
Other DBs
NCBI-ProteinID:
AGT73772
UniProt:
T1UA07
LinkDB
All DBs
Position
494494..496815
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AA seq
773 aa
AA seq
DB search
MQDYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINIT
LTDEGSCIVEDNGRGIPVGIHPTEKIPACTVVLTMLHAGGKFDNDTYKVSGGLHGVGVSV
VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKNAKESGTTIEFFPDGSVMEVV
EFQAGILQKRFKEMAYLNDGLKIAFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIIS
FKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDHN
IKTKESRPISEDIKEGLVAIVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIHQFLE
ENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFL
VEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESF
DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTE
IYLKDSVALDHFLIEHGINSVNIEGIGKNDLMSLLKVARHYRYALLELEKRYNLLEILRF
LIETKDALSLDMKALEKSILEKLEGLNYQVLRSFVTEESLHLHAQTPKGLVEFNLDDNLF
KEVLFEEANYTYQKLMDYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLW
ETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattatcaaagccatagtattaaggttttaaaaggcttagagggggttaggaaa
cgccctggaatgtatattggcgataccaatgtgggtgggttgcaccacatggtgtatgaa
gtcgtggataacgctgtagatgaaagcatggcgggtttttgcgatactattaatatcact
ttgaccgatgaaggctcatgcattgtagaagataacgggcgaggtattcctgtgggtatc
caccccacagaaaaaatccccgcttgcaccgtggttttaacaatgttgcatgcggggggg
aagtttgataatgatacttataaggtttcaggcgggttgcatggcgtgggcgtttcggtt
gtgaatgctttgagcaaacgcttgattatgaccattaaaaaagagggtcaaatctatcgt
caagaatttgaaaagggtatccccattagcgagcttgaaatcattggcaagactaaaaat
gctaaagaaagcggcacgactattgaatttttccctgatggaagcgtgatggaggtcgtt
gaatttcaagcaggtattttgcaaaaacgcttcaaggaaatggcgtatcttaacgatggc
ttaaaaattgctttcaaagaagaaaaaacccaattacaagagacttatttttatgaagac
ggcttgaaacaattcgttaaagacagtgctaaaaaagaattgctcactcccattatttcg
tttaaaagcatggatgaagaaacgcgcacttccatagaggtcgctttggcgtatgctgat
gattataatgaaaacactttaagctttgtgaataacattaaaacttctgagggcggcacg
catgaggcgggctttaaaatgggcttgtctaaagcgatcttgcaatatattgaccataac
attaaaactaaagaatctcgccctatctctgaagacattaaagagggtttagtggctatt
gtgagcttgaaaatgagcgagccgttatttgaagggcagactaaatccaagcttggtagc
tcgtatgtgcgcgcgttagtttcaaaattagtctatgataagatccatcaatttttagaa
gaaaaccctaacgaagctaaaatcatcgccaataaagcccttttagctgcaaaagccaga
gaagccagcaaaaaagccagggagcttaccagaaaaaaagacaatttgagtgtcggcact
ttgccgggaaaattagccgattgccagagtaaagatcccttagagagtgaaatcttttta
gtggagggcgatagcgcaggtgggagcgctaaacaagggcgcgatagggttttccaagcg
attttacccttaaaaggtaagattttaaatgtggaaaaaagccatttgtcaaaaatttta
aaatcagaagaaattaaaaacatgatcacggcttttgggtgcggcattcaagagagtttt
gatatagaaaggttgcgctatcataaaatcattatcatgactgatgctgatgtggatggg
agccatatccaaaccttgctgatgacttttttctatcgttatttacgcccactgattgaa
caagggcatgtttatatcgctcaagcccctctttataaatacaagaaaggcaagacagaa
atttatcttaaagacagcgtcgctttggatcattttttaattgaacatggcatcaattca
gtgaatattgaagggattggcaagaacgatttgatgagtttgttaaaagtggcgcgccat
taccgctatgcgcttttggagttagaaaaacgctacaacttgctagaaattttacgcttt
ttgattgaaactaaagacgctttaagccttgatatgaaagcgttagaaaaaagcattttg
gaaaaattagagggcttgaattatcaagttctacgctcctttgttactgaagagagcttg
catctgcatgcgcaaacccctaaaggcttggtggaatttaatctagatgacaaccttttt
aaagaagtgttgtttgaagaagcgaattacacttatcaaaaactcatggactataattta
gatttcttggaaaataaggatattttggcgtttttagaagaagtggaaaatcacgctaaa
aagggagcgaatatccaacgctataaggggctaggcgagatgaaccctaatgatttatgg
gaaacgaccatgcataaagaaaaccgcagtctcatcaaactcaaaattgaagatttagaa
aaaaccgatgcagtcttttcgctttgcatgggcgatgaagtagagcctagaagagccttt
atccaagcgcatgcgaaagatgtgaaacaactggatgtgtga
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