KEGG   Helicobacter pylori SouthAfrica20: HPSA20_0934
Entry
HPSA20_0934       CDS       T02807                                 
Name
(GenBank) outer membrane autotransporter barrel domain protein
  KO
K11028  vacuolating cytotoxin
Organism
hpys  Helicobacter pylori SouthAfrica20
Pathway
hpys03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:hpys00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    HPSA20_0934
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:hpys02000]
    HPSA20_0934
   02044 Secretion system [BR:hpys02044]
    HPSA20_0934
   02042 Bacterial toxins [BR:hpys02042]
    HPSA20_0934
Transporters [BR:hpys02000]
 Other transporters
  Pores ion channels [TC:1]
   HPSA20_0934
Secretion system [BR:hpys02044]
 Type V secretion system
  Autotransporter-1 (AT-1) family
   HPSA20_0934
Bacterial toxins [BR:hpys02042]
 Type III toxins: Intracellular toxins
  Others
   Vacuolating cytotoxin
    HPSA20_0934
 Type II toxins: Membrane damaging toxins
  Pore-forming toxins, Other
   HPSA20_0934
SSDB
Motif
Pfam: VacA
Other DBs
NCBI-ProteinID: AGT74169
UniProt: T1UA68
LinkDB
Position
871434..875375
AA seq 1313 aa
MESQQTYRKVNRPIISLALAGALMSTELGANTPNDPIHSENRAFFTTVIIPAIIGGIATG
TAVGTVSGLLSWGLKQAEQANKAPDKPDKVWRIQAGRGFDNFPHKEYDLYKSLLSSKIDG
GWDWGNAARHYWVKDGQWNKLEVDMQNAVGTYNLSGLINFTGGDLDVNMQKATLRLGQFN
GNSFTSFKDSADRTTRVNFDAKNILIDNFLEINNRVGSGAGRKASSTVLTLKSSEKITSR
ENAEISLYDGATLNLVSSSNQSVDLYGKVWMGRLQYVGAYLAPSYSTIDTSKVQGEMNFR
HLAVGDQNAAQAGIIANKKTNIGVLDLWQSAGLSIITPPEGGYESKTKDTPSQNNPKNET
QKTEIQPTQVIDGPFAGGKDTVVNIFHLNTKADGTIRAGGFKASLSTNAAHLHIGEGGVN
LSNQASGRSLLVENLTGNITVEGTLRVNNQVGGSAVAGSSANFEFKAGADTNNATATFNN
DIHLGKAVNLRVDAHTAYFNGNIYLGKSTNLRVNGHSAHFKNIDASKSDNGLNTSALDLS
GVTDKVNINKLTTSATNVNIKNFDIKELVVTTRVQSFGQYTIFGENIGDKSRIGVVSLQT
GYSPAYSGGVTFKSGKKLVIDEIYHAPWNYFDARNVTDVEINKRILFGAPGNIAGKTGLM
FNNLTLNSNASMDYGKDLDLTIQGHFTNNQGTMNLFVQDGRVATLNAGHQASMIFNNLVD
SATGFYKPLIKVNNAQNLTKNKEHVLVKARNIDYNLVGVQGASYDNISASNTNLQEQFKE
RLALYNNNNRMDICVVRKDNLNDIKACGMAIGNQSMVNNPESYKYLEGKAWKNTGISKTA
NNTTIAVNLGNNSAPTSSESNTTNLPTNTTNNARFASYALVKNAPFARYSATPNLVAINQ
HDFGTIESVFELANRSSDIDALYTHSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEIT
KQLNAATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNHIDSFAKRLQALK
DQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGTSLNNGGNASLYGTSAGVDAYLNGEV
EAIVGGFGSYGYSSFNNQANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLN
FKSALLQDLNQSYHYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNST
NQVALKNGASSQHLFNANANIEARYYYGDTSYFYLNAGVLQEFANFGSNNAVSLNTFKVN
AARNPLNTHARVMMGGELQLAKEVFLNLGFIYGHNLISNAGHFASNLGMRYSF
NT seq 3942 nt   +upstreamnt  +downstreamnt
atggaatcgcaacaaacataccgcaaagtcaatcgccctattatttctctcgctttagcg
ggggcattaatgagcaccgaactaggggctaatacgccaaatgatcccatacacagcgag
aatcgcgcttttttcaccaccgtgatcattccagccattattggtggtatcgctaccggt
accgctgtaggaacggtctcagggcttcttagctggggactcaaacaagccgaacaagcc
aataaagccccagacaaacctgataaagtttggcgcattcaagcaggaagaggctttgat
aatttccctcacaaggaatacgacttatacaaatcccttttatccagcaagattgatgga
ggttgggactgggggaatgccgctaggcattattgggtcaaagacgggcagtggaacaaa
cttgaagtggatatgcaaaacgctgtagggacttataacctttcaggccttatcaacttt
actggtggggatttagacgtcaatatgcaaaaagccactttgcgtttgggccaattcaat
ggcaactctttcacaagctttaaagatagtgccgatcgcaccacgagagtgaattttgac
gctaaaaatatcttaattgataattttttagaaatcaacaatcgcgtgggttctggagcc
gggagaaaagccagctctacggttttgaccttgaaaagttcagaaaaaatcacgagccgt
gaaaacgctgaaatttcgctttatgatggcgccacgctcaatttggtttcaagctcaaat
cagagcgttgatctatatgggaaggtgtggatgggccgtttgcaatatgtgggagcgtat
ttagccccttcatacagtacgatagacacttcaaaagttcaaggggaaatgaattttcgc
catctcgctgtgggggatcaaaacgccgctcaagcgggcattatcgctaataaaaagact
aatattggcgtgctggatttgtggcaaagtgcggggttaagcattatcacccctccagaa
ggcggttatgagagtaaaactaaagataccccttctcaaaataaccctaaaaatgagacg
caaaaaacagaaattcaacccacgcaagttattgatgggccttttgcgggcggcaaagac
acggttgtgaatattttccacttaaacactaaagccgatggcacgattagagcgggaggg
tttaaagcttctcttagcacgaatgcggctcatttgcatatcggcgaaggcggtgtcaat
ctgtccaatcaagcgagcgggcgctctcttttagtggaaaatctaaccgggaatatcacc
gttgaggggactttaagggtgaataatcaagtgggcggttctgctgtggcaggctcaagc
gcgaattttgagtttaaggctggcgctgataccaacaacgccacagccactttcaataac
gatatccatctaggaaaagcggtgaacttaagagtggacgctcatacagcttattttaat
ggcaatatttatctgggaaaatccacgaatttaagagtgaatggccatagcgctcatttt
aaaaatattgatgccagtaagagcgataacgggctaaacactagcgctttggatttgagc
ggcgttacagacaaagtcaatatcaacaagctcactacatctgccactaatgtgaacatt
aaaaactttgacattaaggaattagtggttacaacccgtgttcagagttttgggcaatac
actatttttggcgaaaatataggcgataagtctcgcattggtgtcgtgagtttgcaaacg
ggatatagcccggcctattctgggggcgttacttttaaaagcggtaaaaaactcgttata
gatgaaatttaccatgccccttggaattattttgacgctaggaatgttaccgatgttgaa
atcaacaaaaggattctttttggagccccaggaaacattgccggcaaaacagggcttatg
tttaataacctaaccctaaatagtaatgcgagcatggattatggtaaagatttggattta
accattcaagggcatttcactaacaatcaaggcacgatgaatctttttgtccaagatggg
cgtgtggcgaccttaaatgcaggccatcaagcaagcatgatatttaataatttagtggat
agcgcgaccgggttttacaaaccactcattaaggttaataacgctcaaaacctcactaaa
aataaagaacatgttttagtgaaagcgcgaaacattgattataatttagtgggagtgcaa
ggcgctagttatgacaatatttctgcaagcaacaccaatctgcaagagcaattcaaagag
cgcctagccctttataacaacaataaccgcatggatatttgtgtggtgcgaaaagacaat
ctcaatgacattaaagcatgcgggatggctatcggcaaccaaagcatggtgaataaccct
gaaagttacaagtatcttgaaggtaaggcatggaaaaatacaggcattagtaaaaccgct
aacaacaccacaatcgctgttaatttaggcaacaattctgcacctactagttctgagagc
aacaccaccaacttacccaccaacaccactaacaatgcgcgtttcgctagctacgctctc
gtaaagaacgctcctttcgctcgttatagcgccactcctaatttagtcgctatcaatcag
catgattttggcaccattgaaagcgtgtttgaattggctaaccgctctagtgatattgac
gcgctttatactcattcaggtgcgcaaggcagggatctcttacaaaccttattgattgat
agccatgatgcgggttatgccagaaccatgattgatgctacaagcgctaatgaaatcacc
aagcaattgaatgcggccactaccactttaaacaacatagccagtttagagcataaaacc
agcggcttacaaaccttgagcttgagcaatgcgatgattttaaattctcgtttagtcaat
ctctctagaaggcacaccaaccatattgactcgttcgctaagcgcttacaagctttaaaa
gaccaaagattcgcttctttagaaagcgcagcggaagtgttgtatcaatttgcccctaaa
tatgaaaaacccaccaatgtttgggctaacgctattgggggaacgagcttgaataatggc
ggcaacgcttcattgtatggcacaagtgcgggcgtagatgcttaccttaacggggaagtg
gaagccattgtgggcgggtttggaagctatggttatagctcttttaataatcaagcgaac
tctcttaactctggggccaataacactaattttggcgtgtatagccgtatttttgccaac
cagcatgaatttgattttgaagctcaaggggcgctagggagtgatcaatcaagcttgaat
ttcaaaagtgctctactgcaagatttgaatcaaagctatcattacttagcctatagtgct
gcaacaagagcgagctatggttatgactttgcgttttttaggaacgctttagtgttaaaa
ccaagcgtgggcgtgagctataaccatttaggttcaaccaactttaaaagcaacagcacc
aatcaagtggctttgaaaaatggtgcgagcagtcagcatctattcaacgctaacgctaac
atagaagcccgctattactatggggacacttcatacttctatttgaatgctggagttttg
caagagtttgcgaattttggatctaacaatgcggtgtctttgaacacctttaaagtcaat
gccgctcgcaaccctttaaacacgcatgccagagtgatgatgggtggggaattgcaatta
gctaaagaagtgtttttgaatttgggctttatttacgggcataacttgatttccaatgcg
ggccatttcgcttccaatttaggaatgaggtatagcttctaa

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