Helicobacter pylori SouthAfrica20: HPSA20_1522
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Entry
HPSA20_1522 CDS
T02807
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hpys
Helicobacter pylori SouthAfrica20
Pathway
hpys03030
DNA replication
hpys03430
Mismatch repair
hpys03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hpys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPSA20_1522 (dnaE)
03430 Mismatch repair
HPSA20_1522 (dnaE)
03440 Homologous recombination
HPSA20_1522 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hpys03032
]
HPSA20_1522 (dnaE)
03400 DNA repair and recombination proteins [BR:
hpys03400
]
HPSA20_1522 (dnaE)
Enzymes [BR:
hpys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPSA20_1522 (dnaE)
DNA replication proteins [BR:
hpys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPSA20_1522 (dnaE)
DNA repair and recombination proteins [BR:
hpys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPSA20_1522 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGT74730
UniProt:
T1UBI2
LinkDB
All DBs
Position
complement(1401934..1405569)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKETKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLASKETKQRFHLCLFAKNQEGYENLMYLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTNNERNRRYGAKGYDEAKKIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAKNEGLDFEDDASYFTHKAREGLKERLILVPEEKHEQYKERLEKEIGVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
ISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDIAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHQISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGSEPIKNIIEERTKGDYKNLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMESETREQVVLDMVDLGEHDAKTLLEYEYETLGIHVSGNPLDEFKEEVKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLNALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPNKQKEDVREIPPIEMLA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKGKQCKIQSDLMVNEKIKD
DFKELEWRDLA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaactaaagcttttacgcatttgcacttgcacacagaatattcgcttttagac
ggggccaataagattaagattttagccaaacgcattaaagagttgggcatgaaaagcgtg
agcgtaaccgaccatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gaaggcatcaagcctatcatcggcatggaagcgtatatccataatgacgacaatctcgct
agcaaagaaaccaaacaacgcttccacttgtgtttgttcgccaaaaaccaagagggctat
gaaaatttgatgtatttaagctctatggcgtatttagaggggttttattatttcccgcgc
atcaataaaaaacttttaagggaacattctaaagggattatcgcttctagcgcgtgcttg
caaggggaagtcaattaccatttgaataccaataatgagagaaatcgcaggtatggggct
aagggctatgatgaagctaaaaaaatcgcttgcgaataccaagagatttttgaagacgat
ttttatttagaaatcatgcgccatggcattttagatcagcgattcattgatgagcaagtc
attaaaatgtctttagaaacagggttaaaaatcattgccacaaacgatacccactacacc
atgcctaatgacgctaaagcccaagaagtggcgatgtgcgtagcgatgggtaaaacccta
aacgataaggggcgcttgaaacactccgtgcatgagttttacattaaatcccctgaagaa
atggcgaagttgtttgcagacattccagaagcgttagaaaacacccaagaaattgcggat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccccccaagc
tttaaattcaccaaagcttacgctaaaaatgaggggctggattttgaagatgacgcttct
tattttactcataaggctagagagggtttgaaagaacgcttaatcttagtgccagaagaa
aagcatgagcaatataaagagcgcttggaaaaagaaattggagtcattacgaacatgaaa
ttcccgggttacatgctaattgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtagggcctggtagggggagcgcggccgggagcttggtggcttttgcgctaaaaatc
acggatattgaccccttgaaatacgatttgctttttgaaaggtttttaaaccctgaaaga
atcagcatgcctgatattgatacggatttttgccagcgccggcgcaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataaaatg
ctggctaaaggcgtgatcagagatgttgcaagggttttggacatgccttataaagaggct
gatgattttgccaaactcatacctaaccgcttgggtatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattagtggaa
agcaatgacatagccaagcaggtgtgggagtattcgctcaatttagagaatttgaatcgc
aacgcaggcgtgcatgccgcagcgttagtggtggatagccaaaaagaattgtggcacaaa
acccctttatttgcctctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagaaccggtggatttgatcaaatttgactttttggggcttaaaaccttgaccgtgatt
gatgatgcgctcaaaatcattaaaacccaacaccaaattagcgtggattttttatcgcta
gatatggacgatccgaaagtgtataaaacgatccaaagcggcgacacggtggggatattc
caaattgaatccggaatgtttcaagggcttaacaagcgcttaaggccttcaagctttgaa
gacattatcgctatcatcgcactagggagaccaggccccatggaatcaggcatggtagat
gattttgtgaatagaaagcatggcattgagcctattacttatgcgtttaaagaattagag
ccgattttaaagcccacttacggcacgatcgtctatcaagagcaggtgatgcaaatcgtg
caaactattggcgggtttagtttgggcgaagcggatttgatccgccgcgcgatggggaaa
aaagacgctcaaatcatggcggacaataaggctaaattcgtagaaggggctaaaaattta
gggcatgatggccaaaaggcggctaatttgtgggatttgatcgttaaatttgccggctat
ggtttcaacaaatcccattccgccgcctatgcgatgatcactttccaaacggcgtattta
aaaacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatt
gaatccgtggcgcgctatattgatgaggttagggctttagaaattgaagtgatgccaccg
catattaattcttctatgcaagatttcagcgtggcggagtttaaaaatcaaaagggtgag
ctagaaaagaaaatcgtatttggtttaggcgcaattaaaggggtggggagcgagccaatt
aaaaacatcattgaagaaaggactaaaggggactataagaatttagaagattttatttca
cgggtggatttttccaaactcactaaaaaatctttagagccattggtgaaatccgggagc
ttggacaatctgggctacacccgaaaaaccatgctcgctaacttggatttgatctgtgat
gcagggcgcgctaaagacaaggctaatgaaatgatgcaagggggcaattctctttttggg
gccatggaaagcgaaacaagagagcaggtcgttttggatatggttgatttaggcgaacat
gacgctaagacgcttttagaatacgagtatgaaactctaggtatccatgtttcaggcaac
cctttagatgagtttaaagaagaggttaagggctttaaaaatttagtcaaaagcattgat
attgaagagttagaaattggctcgcaagcttacttattgggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaagccctatggcacagcggacattttagatagatac
ggcaagtttgaactcatgctttttgaaaagcaattaaacgctttagaagagttggatatt
aacaagcctttagtgtttaaatgcaagattgaagagcaagaagaagtggcgcgattaagg
ctttttgaaatcttggatctagaaagcgctagagaggttaaaatccctaaagcccgctat
aaagaccctaacaagcaaaaagaagatgtgcgcgaaatcccccccattgaaatgctcgct
tccagctcttgctctttagcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctttaaaacaccagggcaaacgccccttatatttgatcatcaaa
gacaagggcaagcaatgcaaaatccaaagcgatttgatggtcaatgaaaagattaaggac
gattttaaagaattggagtggagggatttagcttga
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integrated database retrieval system
