Helicobacter pylori SouthAfrica20: HPSA20_1542
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Entry
HPSA20_1542 CDS
T02807
Name
(GenBank) uvrD/REP helicase family protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hpys
Helicobacter pylori SouthAfrica20
Pathway
hpys03420
Nucleotide excision repair
hpys03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hpys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSA20_1542
03430 Mismatch repair
HPSA20_1542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hpys03400
]
HPSA20_1542
Enzymes [BR:
hpys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSA20_1542
DNA repair and recombination proteins [BR:
hpys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPSA20_1542
MMR (mismatch excision repair)
Other MMR factors
HPSA20_1542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGT74750
UniProt:
T1UBK0
LinkDB
All DBs
Position
complement(1423197..1425242)
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AA seq
681 aa
AA seq
DB search
MDFAKSILDHLNEAQKIAACHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLT
LTFTNKASKEMQERALKLLNNQAFIPPLLCTFHRFGLLFLRQHMSLLKRACDFSVLDSDE
VKTLCKQLKISGFRANISQIKNGMMDLNAQDTECYKAYGLYQNALKKDNLVDFDDLLFLS
LKILQDNEKLAKEISERYHYIMVDEYQDTNALQLEFLKRLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGAKVVKLETNYRSSAEILECANALISHNQHRHIKTLQSFKGPHK
SVICKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHAVAKKDDRFFIKRVLNKPPRGLGKITQELIFSLLDEEDLN
LEEALKLEAFKDKLNPKNEYALKKFMAMIGRLREAFEISVEKFCERFLEETNLLKSYEKE
ENYEEREGFVKELLSLMKEHFKTNPTHSLLDFLNESVLNVHNTENARKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEELQLSYVKERSYFGRKIA
CLPSSFLEEAKLLQQNKPPKQNHPKNTPIKVGDLIKHKIFGTGRVLGVEKGLSGWCFKIN
CGGNVYDKISEKFVEKVGSGF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcaaaaagtattttagaccatttgaacgaagcgcaaaaaatcgctgcatgt
cacattcaagggccattattgattttagcgggagctgggagcggtaagactaaaacttta
acgagccgtttagcgtatttgattggggtttgtggcgtgcctagcgagaacactttgacg
ctcactttcaccaataaagcgagcaaggaaatgcaagaaagggctttgaaattattgaac
aatcaagcgtttatccctcctttgctttgcactttccatcgttttggtttgttgttttta
agacaacacatgagccttttaaaaagggcgtgcgatttttcggtgctagatagcgatgag
gttaaaacgctgtgcaaacagctcaaaatttcaggttttagggccaatatttctcaaatc
aaaaacggcatgatggatttaaatgcgcaagacacagaatgctataaagcgtatgggctt
tatcaaaacgccctcaaaaaagacaatttagtggattttgacgatttgctttttttaagc
cttaagattttgcaagacaatgaaaaactcgccaaagagatcagcgaacgctaccattac
attatggtggatgagtatcaagacactaacgccttgcaactagagtttttaaagaggttg
agtttcacgcaccataatttgtgcgtggtgggcgatgacgatcaaagcatttatggtttt
aggggagcggatatttctaatattttaaatttttccaagcatttcaagggggctaaagtg
gtgaaattagaaactaactaccgttctagcgctgaaattttagaatgcgctaacgccctc
attagccacaaccaacaccgccatattaaaacgctccaaagttttaaaggcccgcataaa
agcgttatttgtaaagaatatttgacgcaaaaagaagagagcttagatgtggcttatcaa
atcaaagcccttttaaagaagggcgaaaatttagaaaatatcgctattttgtatcgctta
aacgggcttagccgcagcattgaagagagtttgaacgctttgaatatcccttataggctt
attggggcggtgagtttctatgaaagagcggaggttaaagatgctttggcgttcatgcat
gcagtggctaaaaaagacgatcgcttttttatcaagcgcgttttaaacaagcccccaaga
ggccttggcaagatcactcaagaattgattttttctcttttagatgaggaggatttgaat
ttagaagaagcgctaaaacttgaagcgtttaaagacaaactaaaccctaaaaacgaatac
gctttaaagaaattcatggccatgatagggcgattaagggaggcttttgaaatttcagta
gagaagttttgcgagcgttttttagaagagactaatctgttaaaaagctatgaaaaagaa
gagaattacgaagaaagggagggctttgtcaaagagcttttaagtttaatgaaagagcat
tttaaaactaaccccacgcattctttactggattttttaaatgaaagcgtgctaaatgtc
cataatacagaaaacgcgcgcaaagtgagttgcatgagcgtgcatatgagtaagggcttg
gaatttaaacatgtgtttgtgatcggtttagaagaagggtttttcccgcatagggggttt
aatcaagaaagcgatttagaagaagaaaggcgcttggcttacgtggcgatcactagggct
aaagaggaattgcaactttcttatgtcaaagagcgttcgtattttgggaggaaaatcgcc
tgtttgccctcttcatttttagaagaagctaagttgctccaacaaaataaaccccctaaa
caaaatcacccaaaaaacacgcccattaaagtgggggatttaatcaagcataagattttt
ggcaccgggagggttttgggcgtagaaaaaggcttgagcggttggtgttttaaaatcaat
tgcggagggaatgtctatgataaaatctcagaaaaatttgtagaaaaagtgggtagcggg
ttttga
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