Helicobacter pylori 52: HPKB_0257
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Entry
HPKB_0257 CDS
T01898
Name
(GenBank) DEAD-box ATP dependent DNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hpz
Helicobacter pylori 52
Pathway
hpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPKB_0257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpz03019
]
HPKB_0257
03009 Ribosome biogenesis [BR:
hpz03009
]
HPKB_0257
Enzymes [BR:
hpz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPKB_0257
Messenger RNA biogenesis [BR:
hpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPKB_0257
Ribosome biogenesis [BR:
hpz03009
]
Prokaryotic type
rRNA helicases
HPKB_0257
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_30
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
ACX98869
LinkDB
All DBs
Position
260758..262236
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQEPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEAIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPSNKKTHQHEQARSFKKGQHKDRHP
KANHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaagaaccactccctacagaaattgatgatgacgcttaccataagcct
agttttaacgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttctccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggctttagtgatcacgcctactagagaattagcc
atgcaaattagcgatgagattttcaaattgggcaaacacactaggactaaaaccgtatgc
gtgtatggaggccagagcgttaaaaagcaatgcgaatttattaagaaaaacccccaagtg
atgatcgctacaccaggaaggttattggatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagtgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagattagcggataagattttagaaaaccctattaaaatc
catatcgccccctctaatatcactaacgctgacatcacccaacgcttttatgtgatcaat
gagcatgagagggctgaagcgatcatgcgtcttttagacacccaagcgcccaaaaagagc
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggacatggatcaaagggatcggcgcacttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagtcgtggg
ctagacattagcggtgtaagccatgtgttcaattaccacttgcccctaaatactgagagc
tatatccatcgcatcgggagaaccgggcgagcgggtaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgagatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaagcaatcatcagcctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaagcttttgagtttgcagtttgaaaccagcaaaattggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaccctctaacaaaaaa
acgcaccaacatgagcaagcgcgttctttcaaaaagggtcagcacaaagacagacaccct
aaagcaaaccaccattctaaaaaacccaaacgccgttaa
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