KEGG   Helicobacter pylori 52: HPKB_0587
Entry
HPKB_0587         CDS       T01898                                 
Name
(GenBank) phosphodiesterase
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
hpz  Helicobacter pylori 52
Pathway
hpz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hpz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPKB_0587
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hpz03019]
    HPKB_0587
Messenger RNA biogenesis [BR:hpz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HPKB_0587
SSDB
Motif
Pfam: HD RNase_Y_N KH_1 HDOD KH_KhpA-B UPF0242
Other DBs
NCBI-ProteinID: ACX99185
LinkDB
Position
604644..606227
AA seq 527 aa
MGLIYISLEVLVACLITALAMYYVMKKIYYARGQTILKGASAKAKLMEFQAKSFVEAEEM
RMKSQECKLQQQYENKNLQLQTHFEKKEAHLKHLEAQHKEFVRDEKRYLEKEKQELEKER
QILEQEKENFKKQRAVCKEDQAKALDAMLNYMAYTKDEIKNMVLEQLEEELEAQKSALIK
RYEKEAKEEGKKKSYAILAEATARFAGNYAAENLTTRIALPCSDYVGRVIGKDGKNIEAF
KKVSGVDIEFSEDSSELCLSSFNLYRREVASETLKILIEDGRIQPNRIEEVYHRVARNME
KELLSEGESVVLELELGVMEDELKFLIGKMRYRSSFGQNALQHSKEVALLAGLIAEQLGG
DKKLARRAGILHDIGKALTQELGRDHVNLGVEVCKRHKEDPVVINAIYAHHGHEEIMSVE
CASVCAADALSAGRPGARRKSDEEYAKRMQALEEIALEFDGVEKAYAMESGRELRVIVKS
NQVRDNQVPIIARKIAKKIEESAQYVGEVGVQVVRESRFKTTATLKQ
NT seq 1584 nt   +upstreamnt  +downstreamnt
atggggttaatttacatttcattagaagtcttggtagcgtgtttgattaccgctctagcc
atgtattatgtgatgaaaaagatctattatgctagagggcaaaccattttaaaaggcgct
tcagctaaagccaaattgatggagtttcaagctaaatctttcgtggaagctgaagagatg
cgcatgaaaagccaagaatgcaaattgcaacagcaatacgaaaataaaaatttgcaactc
caaacccattttgaaaaaaaagaagcgcatttgaagcatttagaagcgcagcacaaagaa
tttgtaagagatgaaaaacgctatttagaaaaagaaaaacaagagcttgaaaaagaacgc
caaattttagagcaagaaaaagaaaattttaaaaaacagcgtgctgtttgtaaagaagat
caagccaaagcgctagacgcgatgctcaattacatggcttataccaaagatgaaattaaa
aacatggttttagagcaattagaagaagaattggaagcgcaaaaaagcgcattaatcaag
cgttatgaaaaagaagccaaagaagagggcaagaaaaaatcgtatgccattttagcggaa
gcgacagcccgttttgcgggtaattatgcggcagagaatttaacaactcgcattgctttg
ccttgctcagattatgtcggtcgtgtgataggcaaagacgggaaaaatattgaagcgttt
aaaaaagtcagcggagtggatatagaatttagcgaagatagcagcgaattgtgtttgtcc
agtttcaatctttatcggcgtgaagtagcgagcgagacacttaaaattttaatagaagac
ggccgtatccagcctaacaggattgaagaggtctatcatagagtcgcgcgcaacatggaa
aaagaattgctttctgaaggggagagcgtggtgctagaattagagcttggggttatggaa
gatgagcttaaatttttaataggcaaaatgcgttatcgctccagttttgggcaaaacgcc
ttacagcattctaaagaagtcgctcttttagccggcttgattgcagagcagcttgggggg
gataaaaaactcgccagaagagccggtattttgcatgatattggtaaagcgctcacccaa
gagcttgggagagaccatgtgaatttaggggttgaggtgtgcaagcgccataaagaagat
ccggttgtgattaatgcgatttatgcccaccatgggcatgaagagatcatgagcgtagag
tgcgcgagcgtgtgcgcggctgatgcgctttcagcagggcgtcctggggctagaagaaag
agcgatgaagaatacgctaaacgcatgcaagctttagaagagatcgcgttagaatttgat
ggggtggaaaaagcgtatgcgatggagagtgggcgagaactaagagtgattgtcaaatcc
aaccaagtcagggacaatcaagtgcctattattgctagaaagatcgctaaaaagatagaa
gagagtgctcagtatgtgggtgaagtgggcgtgcaggtggtgcgagaaagccgtttcaaa
acgaccgctacgctcaagcaataa

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