Helicobacter pylori 52: HPKB_0587
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Entry
HPKB_0587 CDS
T01898
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hpz
Helicobacter pylori 52
Pathway
hpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPKB_0587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hpz03019
]
HPKB_0587
Messenger RNA biogenesis [BR:
hpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPKB_0587
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_KhpA-B
UPF0242
Motif
Other DBs
NCBI-ProteinID:
ACX99185
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Position
604644..606227
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AA seq
527 aa
AA seq
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MGLIYISLEVLVACLITALAMYYVMKKIYYARGQTILKGASAKAKLMEFQAKSFVEAEEM
RMKSQECKLQQQYENKNLQLQTHFEKKEAHLKHLEAQHKEFVRDEKRYLEKEKQELEKER
QILEQEKENFKKQRAVCKEDQAKALDAMLNYMAYTKDEIKNMVLEQLEEELEAQKSALIK
RYEKEAKEEGKKKSYAILAEATARFAGNYAAENLTTRIALPCSDYVGRVIGKDGKNIEAF
KKVSGVDIEFSEDSSELCLSSFNLYRREVASETLKILIEDGRIQPNRIEEVYHRVARNME
KELLSEGESVVLELELGVMEDELKFLIGKMRYRSSFGQNALQHSKEVALLAGLIAEQLGG
DKKLARRAGILHDIGKALTQELGRDHVNLGVEVCKRHKEDPVVINAIYAHHGHEEIMSVE
CASVCAADALSAGRPGARRKSDEEYAKRMQALEEIALEFDGVEKAYAMESGRELRVIVKS
NQVRDNQVPIIARKIAKKIEESAQYVGEVGVQVVRESRFKTTATLKQ
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggggttaatttacatttcattagaagtcttggtagcgtgtttgattaccgctctagcc
atgtattatgtgatgaaaaagatctattatgctagagggcaaaccattttaaaaggcgct
tcagctaaagccaaattgatggagtttcaagctaaatctttcgtggaagctgaagagatg
cgcatgaaaagccaagaatgcaaattgcaacagcaatacgaaaataaaaatttgcaactc
caaacccattttgaaaaaaaagaagcgcatttgaagcatttagaagcgcagcacaaagaa
tttgtaagagatgaaaaacgctatttagaaaaagaaaaacaagagcttgaaaaagaacgc
caaattttagagcaagaaaaagaaaattttaaaaaacagcgtgctgtttgtaaagaagat
caagccaaagcgctagacgcgatgctcaattacatggcttataccaaagatgaaattaaa
aacatggttttagagcaattagaagaagaattggaagcgcaaaaaagcgcattaatcaag
cgttatgaaaaagaagccaaagaagagggcaagaaaaaatcgtatgccattttagcggaa
gcgacagcccgttttgcgggtaattatgcggcagagaatttaacaactcgcattgctttg
ccttgctcagattatgtcggtcgtgtgataggcaaagacgggaaaaatattgaagcgttt
aaaaaagtcagcggagtggatatagaatttagcgaagatagcagcgaattgtgtttgtcc
agtttcaatctttatcggcgtgaagtagcgagcgagacacttaaaattttaatagaagac
ggccgtatccagcctaacaggattgaagaggtctatcatagagtcgcgcgcaacatggaa
aaagaattgctttctgaaggggagagcgtggtgctagaattagagcttggggttatggaa
gatgagcttaaatttttaataggcaaaatgcgttatcgctccagttttgggcaaaacgcc
ttacagcattctaaagaagtcgctcttttagccggcttgattgcagagcagcttgggggg
gataaaaaactcgccagaagagccggtattttgcatgatattggtaaagcgctcacccaa
gagcttgggagagaccatgtgaatttaggggttgaggtgtgcaagcgccataaagaagat
ccggttgtgattaatgcgatttatgcccaccatgggcatgaagagatcatgagcgtagag
tgcgcgagcgtgtgcgcggctgatgcgctttcagcagggcgtcctggggctagaagaaag
agcgatgaagaatacgctaaacgcatgcaagctttagaagagatcgcgttagaatttgat
ggggtggaaaaagcgtatgcgatggagagtgggcgagaactaagagtgattgtcaaatcc
aaccaagtcagggacaatcaagtgcctattattgctagaaagatcgctaaaaagatagaa
gagagtgctcagtatgtgggtgaagtgggcgtgcaggtggtgcgagaaagccgtttcaaa
acgaccgctacgctcaagcaataa
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