Helicobacter pylori 52: HPKB_0793
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Entry
HPKB_0793 CDS
T01898
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hpz
Helicobacter pylori 52
Pathway
hpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPKB_0793 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hpz03021
]
HPKB_0793 (rho)
03019 Messenger RNA biogenesis [BR:
hpz03019
]
HPKB_0793 (rho)
Transcription machinery [BR:
hpz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HPKB_0793 (rho)
Messenger RNA biogenesis [BR:
hpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPKB_0793 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA_28
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ACX99385
LinkDB
All DBs
Position
828387..829703
Genome browser
AA seq
438 aa
AA seq
DB search
MNENVPTHKSPHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaatgtgcctacgcataaaagtccgcacaaagtcaaaacgcacacgccagta
agcggttatcacattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaattcaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagttacgcaaggcggatacattctttttaccgggattttagaaatcatg
cctgatggctatggctttttaagagggtttgatgggagtttttcagacgggcataacgac
acttatgttagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccccaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccctcagatgagattaaaaaccgccctttgtttgacaatctaaccccc
ctattcccggatgaacaaatcaaattagaatacgaacccactaaagttaccggcagaatg
ctagatttattcagccctgtggggaaaggtcaaagggctttgatcgtcgcgccaccaagg
actgggaaaacggagctgatgaaagaactcgcccaaggcatcacctctaaccaccctgaa
gtggaactgattatccttttagtggatgagcgccctgaagaagttacggatatgcaacga
agcgttaaaggtcaagtttttagctccacttttgatttgcccgcaaacaaccacataaga
atcgctgagttggtgctagaaagggctaaaaggcgagtggaaatgggcaaagatgtggtg
gttttactagattctatcacccgtttagccagagcgtataacgctgtaacgccctcaagc
ggtaaggttttaagtgggggcgtggatgcgaacgccttgcacaggcccaagcgctttttt
ggagccgcaaggaatattgaagaaggcgggagcttgacgattatcgctactgcattgatt
gaaacgggatccagaatggatgaggtgatttttgaagaatttaaaggcaccgggaatagc
gaaatcgttttagcgaggaatattgcagacaggcgcatttacccggcctttgatatttta
aaatccggcacacgaaaagataatatcttgcttggcaaagaccgcttgactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggatgacatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaatttaatgaatgaaaaataa
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