Halomonas qaidamensis: K1Y77_04235
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Entry
K1Y77_04235 CDS
T08648
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hqd
Halomonas qaidamensis
Pathway
hqd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hqd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1Y77_04235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hqd03019
]
K1Y77_04235
03009 Ribosome biogenesis [BR:
hqd03009
]
K1Y77_04235
Enzymes [BR:
hqd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K1Y77_04235
Messenger RNA biogenesis [BR:
hqd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K1Y77_04235
Ribosome biogenesis [BR:
hqd03009
]
Prokaryotic type
rRNA helicases
K1Y77_04235
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UYV19893
UniProt:
A0ABY6JRT8
LinkDB
All DBs
Position
907004..908716
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AA seq
570 aa
AA seq
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MTSTSVASPSFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVAILCGGQEYRE
QLGALKRGAQVIVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQRIVRVDGGAKLEALA
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDEVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKEKPMRDGAPGAKPGGRRERSSAPSEGMIRYRVSVG
HKDGVKPGQLVGALANEGGIEGGRIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDSAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctctgctgttgaagcacaaggctacgaaattccttcgccgatccaggcgcagactatt
cctgcgttgttggaaggccgcgatatgctgggccaagcacaaaccggcaccggcaaaact
gctgcgtttgcattgccattgttatcgcgtttagaacttacccgtcgcgagcctcaagta
ctggttatggctccaacccgtgaacttgctcagcaggttgcggcttcgttcagtaaatat
ggccaaaaccttaagggtcttgaagtagcgatcctttgtggtggtcaagaataccgtgaa
cagttaggcgcgctaaagcgcggtgcccaagtcattgttggcacccctggccgtattatc
gatcacctagatcgcggtagtctgaaactcgacggtctttcagcactggtgctggatgaa
gctgacgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
cctaaagatgctcagcgtgtgtttttctcggcaacgctgccgactgaaatcgagcgcatt
gttaaccgctacttggttaatccggtgaaagtcgcgattgagtcgcgcaccacaaccggc
gaaaacattgagcagcgcattgtgcgtgttgatggtggtgctaagctcgaagccctggca
cgtattctggaagttgagccagtcgatggggccatcgtctttgtgcgtactcgtgctgct
tgtaccacgctggttgaacagctgacagcgcgtggtgttaacgcggctggtctgtctggc
gatctggaccaaagcctgcgtgaacgcaccattacacgtttgaagcgcggcaaagttgat
gtgttgattgcgacagacgtcgctgcgcgcggtcttgacgtgtcgcgtattactcacgtt
attaactacgatctgccccaagacgcagaagcgtatacccaccgtatcggtcgtaccggt
cgtgcggggcgtagcggtatcgcgattacgttcgcaggtttccgtgaaggccgtaaagtg
ggctggatggagcaggcgaccggtcagaaaatgaccgaaatgccgctgccagacgaagca
gctattcgcgctcaccgtgatgaagtgttccatcatcgcgttgtggcggcactgaccaaa
ggtgctgaagaacagcgtgcgttggttgagcgcctggtagaagaaggccatgacgccgtt
gagctagcctgtgcctttgccgctatggcgcgtgctgacgaagcaccgattggtcgcttg
caggcaccgcgtaaagagaagccgatgcgtgatggcgcgcctggtgccaagccaggtggt
cgtcgcgagcgttccagcgcacctagcgaaggtatgattcgttaccgtgtttccgttggc
cataaagatggcgttaagcctggccaactggttggcgcactggcgaacgaaggtggtatc
gaaggcggtcgtatcggtcgtatcgatattcgtaacgctttctcggtcgttgagctgccc
agtggtttgccttccacaattctggcgaaaatggcacgtgcccgtgttgctggccgcccg
ctagaaatcagtgaagacagcgctcctgagcgtgcgccacgtcgtcgccgtgatgatggt
gatgcgccagttcgtcgccgcgaacgcgcttaa
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