Halomonas qaidamensis: K1Y77_09655
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Entry
K1Y77_09655 CDS
T08648
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hqd
Halomonas qaidamensis
Brite
KEGG Orthology (KO) [BR:
hqd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hqd03009
]
K1Y77_09655 (rlmD)
Enzymes [BR:
hqd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K1Y77_09655 (rlmD)
Ribosome biogenesis [BR:
hqd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K1Y77_09655 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Met_10
TRAM
Cons_hypoth95
RrnaAD
Methyltransf_25
MTS
Methyltransf_15
Methyltransf_11
SAM_MT
Methyltransf_23
DNA_methylase
TehB
adh_short
Motif
Other DBs
NCBI-ProteinID:
UYV17765
UniProt:
A0AA94YL05
LinkDB
All DBs
Position
complement(2085251..2086717)
Genome browser
AA seq
488 aa
AA seq
DB search
MAMLGKRRPSRPASGHSGLVRKPSSKAEQKEGDSTTLVVERLAHDGRGVAHTTAGKTVFI
DQALPGEHVDVAVQVTRKRYDEAHIKNRLTSSEQRVEPPCAYFGQCGGCDLQHLNLTAQR
QHKRDVVTELMARQGLTLGPIAALDGSSEHYRRRARLGVRVDGQGNVLLGFRAPNSHRLI
DIEQCYVLVPALNELMLPLRQLLATLEAPRLVGHVELLATNEATVVLVRQLKAHDQDMAR
WQRFAEQQKISLGTWLGRETPVLHWNGARNNTGPALQDVLNLEELGIQRVKSLINDPPSS
NDEGSKQLTLRFFPGDFLQVNAEVNQKMVAQVLAWLKPAPGQQLVDLFAGVGNFSLPLAA
AGAQVAAIEGNPAMVERITANADANQLEVHARQADLSDASTVQMLLSEHQHIDAIVLDPP
RSGAEAVCQVIGRYNIPRVAYISCDPATLARDAAHLVHAGYRVKQVAVADMFLHTAHLET
LMLFEYEG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggccatgttgggtaagcggcggccatctcggcccgcgtcaggacactcggggctagta
cgcaagccaagcagtaaagctgagcaaaaagagggcgactcgaccacgctagtggtggag
cgtctagcccatgatggccgtggtgtagcgcatactactgccggtaaaacagtctttatt
gatcaagcgttacccggtgagcacgttgatgtggcggtacaggtgacccgcaagcggtat
gacgaagcgcatataaaaaatcggctcacctcttcagaacagcgggttgagcctccctgt
gcttactttgggcagtgcggaggctgtgatttacagcatcttaatcttactgcgcaacgc
cagcataagcgcgacgttgtcaccgagctaatggcgcgtcagggccttacgctaggtcct
attgctgcgttagatggtagtagcgagcactaccgacgtcgtgcccgtcttggggttaga
gttgatggtcaggggaatgttctccttgggtttcgagcacccaatagccaccgattgatt
gatattgaacaatgctacgtgctggtacccgcactgaatgaattaatgcttcctctacgg
cagctattggcaacactagaggctcctcgtctcgttggccatgttgagttgctggcaacc
aatgaagcgacggtagtactggtgcgtcagttaaaagcccatgaccaggatatggctcgc
tggcagcgttttgcggagcagcaaaagatctcgctaggcacctggttagggcgggaaacg
cctgttttgcactggaatggtgcgcgtaataacacagggcccgctctgcaagatgtgctt
aaccttgaagagctcggtattcaacgcgtgaaatcgttaataaacgatcctccttcttca
aatgatgagggatcaaaacaattaacgttacgttttttccctggtgattttttacaggtt
aatgcagaggttaaccaaaaaatggtcgctcaggtgttagcatggttgaaaccagcgcca
ggacaacagctagtggatctttttgctggggttggaaattttagcctgcctttagcagcc
gctggcgcacaagtggcggccatagaaggcaacccagcgatggtggaacggataactgcc
aatgctgacgctaaccaactggaagtacatgcgcggcaagcagacttaagtgacgctagc
acagtgcaaatgctgttaagcgagcatcaacacattgatgcgattgtgcttgaccctccc
cgcagtggtgcagaagcagtttgccaagtaattggccgttacaacataccgcgggtggcc
tatatttcttgtgacccggcaacgcttgctcgtgatgcggcacatcttgtgcatgcaggt
tatcgcgtcaagcaagtcgcagtggcagatatgtttctccacactgcgcatctggaaacg
ctgatgctattcgaatacgagggctag
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