Halomonas qaidamensis: K1Y77_13910
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Entry
K1Y77_13910 CDS
T08648
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hqd
Halomonas qaidamensis
Pathway
hqd03030
DNA replication
hqd03430
Mismatch repair
hqd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hqd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1Y77_13910 (dnaE)
03430 Mismatch repair
K1Y77_13910 (dnaE)
03440 Homologous recombination
K1Y77_13910 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hqd03032
]
K1Y77_13910 (dnaE)
03400 DNA repair and recombination proteins [BR:
hqd03400
]
K1Y77_13910 (dnaE)
Enzymes [BR:
hqd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K1Y77_13910 (dnaE)
DNA replication proteins [BR:
hqd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K1Y77_13910 (dnaE)
DNA repair and recombination proteins [BR:
hqd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K1Y77_13910 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UYV18551
LinkDB
All DBs
Position
complement(3098662..3102165)
Genome browser
AA seq
1167 aa
AA seq
DB search
MTVPFVHLRLHSEYSLVDGLVKLKSLVSTTAERGMPALALTDEANLFGLVKFYKAAQGAG
LKPIIGSDLWLHNPHDEAHPYRITLLAMNDVGYRNLTELISKGWTDGQRHGRAILDKQWV
LAQSEGLIALSGGREGEIGRHLLSEHEREARELLEEWQRAFPDRFYLELIRTGRPLEEEC
VHASVKLAIASNTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRERRYTEEQYLK
SPEEMAALFADIPEALENSVMIAERCSVDVRLGEIFLPEFEIPDGMTQDEFFRKVSHDGL
TERLDFLFPAEQYPRDSDAYREINQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWAKDN
NVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDKV
IEYVANRYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVGMTLAKA
IEQEPALKEFIGNDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
SGLVVQFDKNDIEDAGLVKFDFLGLRTLTIIDWALEMVDKVRGVNGQAPLNIDAIPLDDS
KTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINR
KHGRAEVSYPHPDYQHDLLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGK
KKPEEMAKQRSGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLKLTVTPPDVNVGGYKFTVDTEGRVVYG
LGAIRGVGEGPIGAIVEARNTDGPFKDLFDFCRRMDPKRMNKRTLEALIRSGALDNLGPN
RAVLSAAMEDALKAAAQNHANQNLGMLDMFGDAFSAEEEATDPYAEYQSAREWTDRERLS
GEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKASREPQRVAGLVVAMRTMKSKRGDTM
AFITLDDRTGRIEASLFGELFDQLRGQIESDQVIIVEGEVSNDDFSGGLRLRGKDVTPMV
TARIRYGEAVELALDAEQINGRLVDSLRESLTPYRDTGGLPVRLQYRHSEAVGWLALADD
WKVAPSDDLLLALRDVQGQVGVQLRYR
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgacggttccgtttgttcatctacgtttgcacagtgaatactccctggttgatggcttg
gtaaaactcaagtcactggtcagcaccaccgcggagcgtgggatgccagcactggcctta
accgatgaagctaacctgtttggtctggttaagttctataaagcggcccagggtgctggc
cttaagccgatcatcggtagcgacttatggctgcacaaccctcatgatgaggcccatcca
tatcgcattacgctgctggcgatgaacgatgttggttatcgcaatctcactgaattgatt
tctaaagggtggacggatggccagcgccacgggcgagccattctggacaagcagtgggtg
ctagcgcaaagcgaaggattgattgcactatcaggcgggcgtgaaggcgaaataggtcgt
cacttgctgtctgagcatgagcgcgaagcccgggagctgttagaagagtggcagcgcgcc
tttccagatcgtttttatctggagttaatccgtaccgggcggccgcttgaagaagagtgt
gttcacgcgagtgtgaagctggcgatcgcatcaaataccccggtggtcgcaaccaatgac
gtgcgctttttagagcgggaagacttctgggcccacgaaacccgcgttgccattggtgaa
ggcaaggctttggatgatcctcgccgtgaacgacgctataccgaagagcagtacctgaaa
agccctgaggaaatggcagcactgtttgccgatattcctgaagcgcttgaaaacagcgtc
atgattgctgagcggtgtagcgttgacgtgcgcctgggggaaatttttctgccggagttc
gaaatacccgacgggatgacccaggatgagtttttccgcaaagtctcccatgacggtctc
actgaacggttagattttttgttcccagctgaacagtaccctcgcgatagcgatgcttat
cgcgagattaatcagcgctaccgtgaccggcttgaatttgagctgaacgttattatccag
atgggcttccctggctattttctgatcgtgatggacttcattcagtgggccaaggataac
aacgtgccagttggcccagggcggggttctggtgcgggctccttagtggcttacgcgcaa
aaaattaccgatcttgatccgattggctacgacctgctatttgagcgctttcttaaccct
gaacgtgtctccatgcctgactttgacgtcgatttttgcatggaaaagcgtgacaaggtg
attgaatacgtggcgaatcgctacggccgcaatgcggtatctcagattgttacctttggc
accatggccgcgaaagcggtggtgcgcgatgtggcgcgtgcccaggggcggccctactcg
ttgggcgacaagctctccaagctgattccctttgaagtgggaatgacgcttgccaaagcg
attgagcaagaaccagccctgaaagagtttattggcaacgacgaagaagccgaagagatc
tgggaaatggcccttaagcttgagggcaccacgcgggggactggtaagcacgcggggggc
gtcgtcattgcccccaccaagctaaccgacttctcgccgctgttatgcgatgaagatggt
tcaggcctcgtggttcagttcgataaaaacgacatcgaagacgccgggctagtgaagttc
gacttcttgggcctgcggacgctgacgattatcgactgggcgctggaaatggtcgataaa
gtgcgtggggtaaacggtcaagcgccgctcaatatcgacgctatcccgctagacgatagt
aaaacgtttgagatgctgaaacgagcggaaaccaccgctgttttccagctggaatctcgt
ggtatgaaggagctgattaagcgcctgctgccagactctctcgacgatatgatcgccttg
gtagcgctatttcgcccaggcccgctacagtcgggcatggtggatgactttatcaaccgt
aagcatggccgtgccgaagtctcttatccacacccagattatcagcatgaccttctaaaa
ccggtgctcagcccgacatacggcattattttgtaccaagagcaggtcatgcagattgct
caggtaatggctggctattcattgggtcaggccgacatgctgcgccgcgccatgggtaag
aaaaagcccgaagagatggccaagcagcgttcaggctttatggaaggctgtgcggctaac
ggtatcgataaagaccttgcaggcaatatttttgatcttgttgagaagttcgctggttac
ggctttaacaagtcgcactcagccgcttacgctttggtgtcgtatcaaactgcctggctg
aaggcgcactatcctgggccgtttatggccgccgttatgtcaacggaaatggataacctg
gacaaggtggtgccgctgatagaagagtgtcgccacctcaaactgacggttacaccgccg
gatgttaatgtcggtggctacaagtttaccgtagataccgaagggcgcgtggtgtacggc
ttaggtgccattcgcggtgtcggtgaaggcccgattggggcgattgttgaagctcgtaat
acggatggtccgtttaaagacctgttcgatttttgtcggcgcatggatcccaagcgcatg
aacaagcgtacgctggaagcgctgattcggtcgggtgcgttagataacttgggtccgaat
cgggcggtgttatccgctgcgatggaagatgccttgaaagccgctgcgcaaaaccacgcc
aatcaaaacctgggtatgctggatatgtttggcgatgcgtttagcgcagaagaggaagcg
acagacccttacgctgagtatcaaagcgcccgtgagtggacggatcgtgagcgcctttct
ggggaaaaagatacgctgggcctctatctaaccggtcatcccattgatgaatatgagcgt
gagctaaaacgctttgtttctactcgcattagtgatttgaaggcttcgcgtgagccgcag
cgggtggcgggattagtggtagctatgcgcaccatgaagtccaagcgtggcgataccatg
gcgtttatcacactagatgatcgtactgggcgcatcgaagcttcgctatttggcgaacta
tttgatcaactgcggggccaaattgagtctgatcaagtgatcatcgttgaaggtgaagta
tccaacgatgacttttccggcggtttgcgcttgcggggcaaagacgtgacgccgatggtg
accgcacgtattcgctatggcgaagcggtggaattagcattggatgctgaacagatcaac
ggacgtctagtcgatagcctacgcgagagccttacgccataccgcgataccggcggattg
ccagttcggctgcagtatcgtcactcagaagcggtcggttggttagcattggcggatgac
tggaaagtagctcccagcgatgatctgctgttagcccttcgtgatgtgcaagggcaggta
ggtgttcagctacgctaccgttag
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