Halomonas qinghailakensis: M0220_00425
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Entry
M0220_00425 CDS
T10463
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hqn Halomonas qinghailakensis
Pathway
hqn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hqn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M0220_00425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hqn03400
]
M0220_00425 (mfd)
Enzymes [BR:
hqn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M0220_00425 (mfd)
DNA repair and recombination proteins [BR:
hqn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M0220_00425 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
AAA_22
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
UYO76364
UniProt:
A0AA46TUG7
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All DBs
Position
81387..84836
Genome browser
AA seq
1149 aa
AA seq
DB search
MPSFSLLEPPQPKGTRDTLYLTAPPGSATALALAQVALSAPLLVITPNTASAQRLEQDLA
FYSNVPVLPFPDWETLPYDSFSPHQDIISSRLRTLRLLQDGVRGIVLVPINTLMQRLPPV
SYIAGRVMTLKEGAKLKREAFRESLSRAGYRAVETVYEPGEYAMRGAIIDLFAMGMDEPI
RIDLFDDEIDTLRHFDPGNQRSTNKVGVIELLPAHEYSLSRSAIACFREQFETLFDVDPR
QCPLYNDALKAIPSPGLEQYLPLFFDETASLFEHVTDDTRVALLPGVFEAAEQHWRSIES
RYENLGVDPTRPLLPPLRAFIPVNDVFSAIKARPRIELTEDDTQRHALAPKAQALPSLAI
NARAKQPLNELAAFLNTQHATRVLFVAESRGRREALEEILAPLKLTLPHINSFQDFLSST
DRIAITESLVGSGLWLTEPDVAVISETELFGDVVRQSRRREKATDDNELAVRHLSELREG
APVVHQAHGVGRYLGLETLEAGGQANEFLALSYADGAKLYVPVDSLHLISRYSGADDELA
PLHRLGSDQWEKARRKAAEKIRDTAAELLDIYARREAQEGFIYDTPGEEYVRFSASFPFE
ETPDQHAAIEAVISDMVSAQPMDRVVCGDVGFGKTEVAMRAAFLAVQTGRQVVVLVPTTL
LARQHFENFRDRFADTAVNISLISRFTSGKETTQTLESIKNGQTDIVIGTHKLLSKSVEL
PKMGLLIIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQRDSSIIKEALLREILRGGQVYFLHNEVKTIENAAEQIRELVPEARVAV
AHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMTRDAVKRLEAISASDDLGAGFTLASHDMEIRGAGELLG
DEQSGQMETIGYTLYMEMLDRAVKAIRAGKTPNIDAPFNTGVEISLNLPALIPDDYIHDV
QQRLVMYKRIANTQSDAELKELQVELIDRFGLLPQPLKNLIRQTRLRHRAEQLGVARIEA
GENRGRVLFNSATQVDPLTLVTLIQKSPQHYRLDGSDTLRFEFPMETIEQRFEKVEALLT
TLNQKVAAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgccttctttttctctgctcgaaccgccccagccaaaagggacacgcgacacgctttac
ctaacagcgccgccgggcagtgcaactgccctggcactggcccaggtcgccttaagcgca
ccattattggtcattacgcccaacactgccagcgcgcaacgattggaacaggatctggcg
ttctacagtaatgtgcccgttttgcccttcccagactgggaaacgctgccttatgacagc
ttctccccgcatcaggatattatatcgtcacgcctacgcaccctacgattattgcaggat
ggggtacgcggcattgttctggtgccaattaatacattaatgcagcggcttccccccgtg
tcatatatagctgggcgcgttatgacgttgaaagaaggcgcaaagctaaaacgggaagca
tttcgcgagtcgctctcccgagcaggctatcgtgctgtagaaacggtctacgagcctggt
gaatacgccatgcgtggtgccatcattgaccttttcgccatgggcatggatgagccaatt
cgtattgatttgtttgatgacgaaatcgatacgctacgccattttgaccccggtaatcag
cgatccaccaacaaagtcggtgtgattgagctactaccagcgcatgagtactcattaagc
cgcagcgctattgcctgttttcgagaacagtttgaaacgctttttgatgttgatccgcgc
cagtgcccactctataacgatgcgctgaaagcgattccctcgccaggtctggagcaatat
ttaccgctgttcttcgacgaaactgcttctttatttgagcacgtcaccgatgacacccgt
gtggcactattacccggcgtgttcgaagcagctgaacagcactggcgctcgattgaatca
cgctacgaaaatttaggtgttgatccaacacgtcctcttttaccgcctcttcgcgcgttc
attcccgtgaatgacgttttttcggcgattaaagcacgcccacgaatcgaactcaccgaa
gacgatacacagcgtcatgccctggcgccgaaagcccaggcactaccctcacttgcaatt
aacgctcgcgccaagcaaccgctgaatgaactagccgcctttttaaatacacagcacgct
acgcgggttctgtttgttgccgaatcaagggggcgcagagaagcgttagaagaaatacta
gcgccgcttaaattaacgctgcctcatatcaacagcttccaagactttttaagcagcact
gatcgaattgctataactgaaagcttggtaggtagtggcttgtggcttaccgagcctgat
gtcgcagtgattagcgagactgagctatttggcgatgtagtgcgccagagccggcgacga
gaaaaagccaccgacgacaatgaattggccgtgcggcacctttccgagctgagagaaggt
gccccagttgtgcaccaagcacatggcgtaggccgctatttggggctggaaacccttgaa
gctggtggtcaggctaatgaattcttagccctttcatatgccgacggtgccaagctttat
gtacctgtcgatagcctgcatcttatttctcgctatagcggcgctgatgacgagctcgcc
ccgctacaccgactaggctctgaccaatgggaaaaagcacgccgcaaagcagctgagaaa
atccgagacactgccgccgagctgttagatatctacgctcggcgagaggctcaggaaggg
tttatttatgatacacctggagaggagtatgtccgcttctctgccagcttcccatttgaa
gaaacccccgaccaacatgccgctatcgaagcagttattagcgacatggtctctgctcaa
ccaatggatcgcgttgtttgtggcgatgtaggttttggcaagaccgaagtcgcgatgcgc
gctgcatttctggccgtccagaccggtcgccaagtggtagtgcttgtgcccactaccctg
ttagctcgccagcattttgaaaacttccgagaccgttttgctgacaccgccgtgaacatt
agccttatctcacgcttcaccagtggcaaagaaacgacgcaaaccctggaaagcatcaag
aatgggcagactgacattgtaattggcacccataagctgctgtctaaaagcgttgagctt
cccaaaatggggctcttaattatcgatgaagaacaccgttttggggtcgcgcagaaagag
aaactcaaaacgctacgcgccgaaatcgatattttgacgctaacggcgacaccgattccg
cgcacccttaacatggccatgagcggtatccgagacctttcgattattgccaccccgcca
gcacggcgcttatcggtcaagacgtttgtgcaacagcgagacagtagcatcattaaagag
gccctactgcgtgaaatactacgcggcggacaagtctattttttgcataatgaagtcaaa
acgattgaaaacgccgccgaacaaattcgcgaactggtgccagaagcgcgagtagccgtc
gctcacggccagttaccagaacgcagccttgagcgagtcatgtcagacttctatcatcgt
cgcttcaatgtacttgtatgctcgactattatagaaaccggcattgacgtacccagcgcc
aacacaattctgattgagcgcgccgataagttcggtctggcccagctacaccagctacgt
ggacgcgttggccgcagccaccatcaagcatacgcttacctactaacaccgccccccaaa
gcaatgacacgagatgccgttaaacgtcttgaagcgattagcgcttctgatgatctgggc
gctggttttaccctggcaagtcacgacatggaaattcgcggcgctggcgagctgctaggc
gacgagcagagcggccaaatggaaaccatcggctacacgctttatatggaaatgctggat
cgcgcggtgaaggcaatacgtgcgggcaaaacgcctaacattgacgcccccttcaacacc
ggcgtcgagattagcctcaatctgccagcgttgattccagacgactatattcatgacgta
caacagcgcctagtgatgtataagcgcatcgccaacactcagagcgatgcggaactcaaa
gaactacaagtggagcttattgatcgttttggtctccttcctcaacctttaaaaaacctg
atacgtcaaactaggctgcgccaccgtgctgaacaactgggcgttgcgcgcattgaagcc
ggtgaaaatcgtggccgcgtccttttcaatagcgccactcaggtcgacccattaacgcta
gtgacacttatccagaaatcgcctcaacattaccgtttggatggctcagacacgttacga
tttgaatttccaatggaaactatcgaacagcgttttgaaaaggtcgaagcgctgctaaca
acgctcaaccaaaaagtagcggcggcgtga
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integrated database retrieval system
