Halomonas qinghailakensis: M0220_03390
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Entry
M0220_03390 CDS
T10463
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hqn Halomonas qinghailakensis
Pathway
hqn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hqn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0220_03390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hqn03019
]
M0220_03390
03009 Ribosome biogenesis [BR:
hqn03009
]
M0220_03390
Enzymes [BR:
hqn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M0220_03390
Messenger RNA biogenesis [BR:
hqn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0220_03390
Ribosome biogenesis [BR:
hqn03009
]
Prokaryotic type
rRNA helicases
M0220_03390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UYO75211
UniProt:
A0AA46TRI0
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All DBs
Position
complement(726352..728064)
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AA seq
570 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVAILCGGQEYRE
QLGALKRGAQVIVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQRIVRVDGGAKLEALA
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDEVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKEKPMRDGAPGAKPGGRRERSSAPSEGMIRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDSAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctctgctgttgaagcacaaggctacgaaattccttcgccgatccaggcgcagactatt
cctgcgttgttggaaggccgcgatatgctgggccaagcacaaaccggcaccggcaaaact
gctgcgtttgcattgccattgttatcgcgtttagaacttacccgtcgcgagcctcaagta
ctggttatggctccgacccgtgaacttgctcagcaggttgcggcttcgttcagtaaatat
ggccaaaaccttaagggtcttgaagtagcgatcctttgtggtggtcaagaataccgtgaa
cagttaggcgcgctaaagcgcggtgcccaagtcattgttggcacccctggccgtattatc
gatcacctagatcgcggtagtctgaaactcgacggtctttcagcactggtgctggatgaa
gctgacgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
cctaaagatgctcagcgtgtgtttttctcggcaacgctgccgactgaaatcgagcgcatt
gttaaccgctacttggttaatccggtgaaagtcgcgattgagtcgcgcaccacaaccggc
gaaaacattgagcagcgcattgtgcgtgttgatggtggtgctaagctcgaagccctggca
cgtattctggaagttgagccagtcgatggggccatcgtctttgtgcgtactcgtgctgct
tgtaccacgctggttgaacagctgacagcgcgtggtgttaacgcggctggtctgtctggc
gatctggaccaaagcctgcgtgaacgcaccattacacgtttgaagcgcggcaaagttgat
gtgttgattgcgacagacgtcgctgcgcgcggtcttgacgtgtcgcgtattactcacgtt
attaactacgatctgccccaagacgcagaagcgtatacccaccgtatcggtcgtaccggt
cgtgcggggcgtagcggtatcgcgattacgttcgcaggtttccgtgaaggccgtaaagtg
ggctggatggagcaggcgaccggtcagaaaatgaccgaaatgccgctgccagacgaagca
gctattcgcgctcaccgtgatgaagtgttccatcatcgcgttgtggcggcactgaccaaa
ggtgctgaagaacagcgtgcgttggttgagcgcctggtagaagaaggccatgacgccgtt
gagctagcctgtgcctttgccgctatggcgcgtgctgacgaagcaccgattggtcgcttg
caggcaccgcgtaaagagaagccgatgcgtgatggcgcgcctggtgccaagccaggtggc
cgtcgcgagcgttccagcgcacctagcgaaggtatgattcgttaccgtgtttccgttggc
cataaagatggcgttaagcctggccaactggttggcgcactggcgaacgaaggtggtatc
gaaggcgctcgtatcggtcgtatcgatattcgtaacgctttctcggtcgttgagctgccc
agtggtttgccttccacaattctggcgaaaatggcacgtgcccgtgttgctggccgcccg
ctagaaatcagtgaagacagcgctcctgagcgtgcgccacgtcgtcgccgtgatgatggt
gatgcgccagttcgtcgccgcgaacgcgcttaa
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