Halomonas qinghailakensis: M0220_06785
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Entry
M0220_06785 CDS
T10463
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hqn Halomonas qinghailakensis
Pathway
hqn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hqn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M0220_06785 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hqn03021
]
M0220_06785 (rpoC)
03400 DNA repair and recombination proteins [BR:
hqn03400
]
M0220_06785 (rpoC)
Enzymes [BR:
hqn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M0220_06785 (rpoC)
Transcription machinery [BR:
hqn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M0220_06785 (rpoC)
DNA repair and recombination proteins [BR:
hqn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M0220_06785 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UYO75847
UniProt:
A0AA46YSW0
LinkDB
All DBs
Position
complement(1436288..1440502)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINHLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGYASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEVDVEEETGERSFHRRIYDTTVGRALLFRILPEGVPFSLIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKTEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVIDREGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITETDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAIDVIDPSNDEVLIPRGTLLDEKWCASLDTMGVDEIIVRSTITCDTAHGVCASCY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDGGAIVAK
WDPHTHPIIAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LQDAAGEYVSVSGSNTPVQYLLPGNSIISVDDGSTIGVGEVVARIPVEASGNKDITGGLP
RVADLFEARKPKESAILAEISGVISFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GEAVEKGEVISDGPSNPHDILRLLGVAELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEISDSGDSDFITGDQAELVRVLEQNARLEKEGKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREDVERLF
NPSATEVEQELGAQLTALDSDDEL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcaatctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtcgtttggcgaggtgaagaag
cctgagaccatcaactaccgtacctttaagccggagcgggatggtctgttctgcgccaaa
attttcggcccagtaaaagactatgagtgtttgtgcggtaagtataagcgcatgaagcac
cgcggcatcatttgtgagaagtgtggcgttgaagtcaccaaagctgccgtgcgccgtgag
cgcatgggccacattgagctggcatcgccggttgctcacatttggtttttgaagtcactg
ccgtctcgtatcggcatgttcctcgatatgactctgcgtgatatcgagcgcgtgctgtac
ttcgaaagctttgtcgtcatcgatcctggtatgaccacgctggagcgtggtcagttactc
aacgatgagcagtactttgaggcgctagaagagtttggcgatgactttgacgcccgtatg
ggtgccgaagctgtccaagagctgctgaaagatatcgatctggaagaagagattaatcac
ctgcgtgaagagattccgcagactaattctgaaaccaagattaagaagctttcaaagcgt
ttgaagctgcttgaagcgttctaccactccggcaacgcgccagcgtggatggtcatggaa
gtgctgcctgtgctgccgccggatcttcgtccgttggtaccgctggacggcggccgcttt
gcgacctcagatctgaacgacctttatcgtcgcgttatcaaccgtaacaaccgcctgaag
cgtctgcttgatcttaatgcgccggatattatcgtgcgcaacgagaagcgcatgctgcaa
gaagcggttgatgcgttgttggataacggccgtcgtggccgtgccattacaggttctaac
aagcgtccgctgaaatcccttgccgacatgatcaaaggtaagcagggtcgtttccgccag
aacttgctaggtaagcgtgtcgactactccggccgttcggttatcactgtggggccgacc
ttgcgtctgcaccagtgtggtctgcccaagaaaatggcgcttgagctgttcaagccgttt
atctactccaagctgcagtcgttgggctacgcctcaacgattaaagctgccaagaagatg
gttgagcgcgaattgcctgaggtgtgggacatccttgccgatgttatccgtgagcacccg
gtgctgcttaaccgcgcaccgacgctccaccgtcttggtatccaggcgtttgagccgctg
ttgatcgaaggtaaagcgatccagctgcacccgctggtatgtgccgcctacaacgccgac
tttgacggtgaccagatggcggtacacgtaccgctgaccctggaagcccagcttgaagcg
cgtgcgctgatgatggctaccaacaacgtgctgtcacccgccaacggcgagccgatcatc
gttccatcgcaagacgttgttctgggtctgtattacatgacccgcgaaaagatcaacgct
aaaggcgagggcatggtgttctctgacctcaatgaggtagagcgcgcctttggtactcag
tcggtatcgctgcatgctcgcgtgaaagtgcgtctggacgaagtcgatgtcgaagaagag
accggcgagcgtagtttccatcgtcgcatctatgacacgacggttggccgcgcactactg
ttccgtattttgccggaaggcgtgccgttctcgctaatcgatcagccgatgaagaagaag
gcgatctctagcttgatcaatgaggtctaccgtcgtgctggcttgaagcctacggttatc
ttcgctgaccaactgatgtacaccggtttccgtttggcaacgtggtcgggcgcctctatc
ggtgttaacgacttcgttattcctgatgcgaaaaccgagattgttgatgctgcagaagca
gaagttaaagagatcgaagaccagttctcttctggcctagtaactgctggtgagaagtac
aacaaggttatcgatatctggtcgaaggccaacgataaagttgccaaagcgatgatggtg
ggtatctcaaaagagaccgtcattgatcgtgaaggcaacgaagtcgagcaggattcgttc
aacagcgtcttcatcatggctgactccggtgcgcgtggttctgccgcccagatccgtcag
ttggcgggtatgcgtggtttgatggctaagccggatggctcaatcatcgaaacgccgatc
gtcgctaacttccgtgaaggtctaaacgtactgcagtacttcatctcgacccacggtgca
cgtaaaggtcttgcggatacggccctgaaaacggccaactctggttacctgactcgtcgt
ctggtggatgttgctcaggacttggttattactgagaccgactgtggcactgaaaacggc
ttgaccttgcacccgatcatcgagggcggcgacattattgtaccgctgtctcagcgcgta
cttggtcgtgttgttgcgattgatgtgatcgatcctagcaatgatgaagtgcttattccg
cgcggcacgttgctggacgaaaagtggtgtgcgtcgctagacaccatgggtgtcgacgaa
attatcgttcgttctaccattacctgtgacactgcccacggtgtctgtgcttcctgttac
ggacgtgacttggcacgtggccatcaggtcaacattggtgagtctgtcggtgttatcgct
gcacagtccatcggtgagccgggtacacagctgaccatgcgtacgttccacattggtggt
gcggcatcgcgttcatcagcagtggacagcgttcaggtcaagcatggcggtaaagtacgc
ctgcacaacatcaagcatgtagagcgcgctgacggtaagctggtggttgtttctcgctca
agtgcactggcggttgctgatgaccatggtcgtgagcgtgagtactataaactgccctac
ggtgccgagctgtctgttcgtgacggtgacgtggttgatggtggtgcgattgtcgcgaag
tgggatccgcacacccatccgattattgctgaagtagaaggtaaggcgcagtttatcgac
cttgatgaaggtgtcaccatgcaccgcagcgtcgatgaaatgactggcctttcatctatc
gaggtgattgagtcagcagcccgcccgatggccggccgcgataagcgcccgatggtcatg
ctgcaagacgcggcgggtgagtacgtgtcggtatctggctcgaatacgccagtgcagtac
ttgctgccaggcaactcgattatctctgtcgacgatggatctaccattggcgtgggcgag
gtggtcgcacgtatcccggtagaagcatcaggtaacaaagatattactggtggtctgcca
cgcgttgctgatctctttgaggcgcgtaagccgaaagagtcggcgattctggctgaaatc
agcggtgttatcagcttcggtaaagagacaaagggtaagcgtcgtttgacgattacaccg
gaatctggcgatccgtttgaagcactgatcccgaagtggcgtcaaattgctgttttcgaa
ggtgaagccgtcgagaagggtgaagtgatttcggatggaccgagcaatccccacgacatc
ctgcgattactgggtgtggcggaactggccaaatacatcactgctgaagtacaagatgtc
taccgtctgcagggtgttggcatcaacgataagcatatcgaagtcattgttcgtcagatg
ctgcgtaaggtagagatctctgattcaggtgactctgactttattactggcgatcaagcc
gaacttgtacgcgtactagagcagaatgcgcgtcttgagaaagaaggtaaattcccagcc
aagtatcagcgcttgctgctgggtatcactaaggccagcttggccactgagtcgttcatt
tcagcggcatcgttccaggaaacgacccgtgtattgaccgaagcagcggtgacaggcaaa
cgcgactatctgcgcggcctgaaagaaaacgtggtggttgggcgtctgattccggcaggt
accggcctgactcaccacgcagagcgtcgtcgcaaacgtgaagacgttgagcgcttgttc
aacccctcggctaccgaagttgagcaggagcttggtgctcagttaactgcccttgattca
gacgacgagctgtaa
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integrated database retrieval system
