Halomonas qinghailakensis: M0220_10660
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Entry
M0220_10660 CDS
T10463
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hqn Halomonas qinghailakensis
Pathway
hqn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hqn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0220_10660 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hqn03021
]
M0220_10660 (rho)
03019 Messenger RNA biogenesis [BR:
hqn03019
]
M0220_10660 (rho)
Transcription machinery [BR:
hqn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M0220_10660 (rho)
Messenger RNA biogenesis [BR:
hqn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M0220_10660 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
AAA_22
AAA
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
UYO73356
UniProt:
A0AA46YMX0
LinkDB
All DBs
Position
2278280..2279539
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AA seq
419 aa
AA seq
DB search
MNLTELKQKTVPELLDIAREMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQIN
FDRPENAKHKILFENLTPLFPDDRMRMEIGNGSTEDLTARIIDLTAPIGKGQRGLLVSPP
KAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAEKRVFPAINI
RRSGTRREDLLASEDEMQRMWILRKLLNPMEDTAATEFLIDRLKDTKTNLEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcactgaactcaagcaaaaaaccgttcccgagctgctcgatatcgcccgtgaa
atgggtatcgacaacctagcccgttcgcgcaagcaggacatcatcttcgctatcctcaaa
aagcatgcaaaaagcggtgaggatatctacggcgatggtgtgctggaaatacttcaggat
ggctttggcttcctgcgtagcgccgacagctcgtacctcgccggaccggacgatatttac
gtatcgccgtcgcagattcgccgtttcaatctgcgtaaaggtgattccatttccggcaaa
atccgcccgccaaaagaaggtgagcgctactttgccctactcaaagttagccagatcaac
tttgatcgtccggaaaatgccaagcataagattctctttgagaacttaacgccgctattc
ccagatgatcggatgcgcatggagatcggtaacggctctaccgaagatcttaccgcgcgc
atcattgatctgacggcgccaattggtaaaggtcaacgtggtctgttggtgtcaccgcct
aaagcgggtaagacactgatgctgcagaacatcgcgacgtcgattacgcgcaataatcct
gagtgccatctgattgtattgctgatcgatgagcgccctgaggaagttaccgaaatgtca
cgcaccgtgcgtggcgaagtggttgcttctactttcgatgaaccgcccgctcgccatgtg
caggttgccgaaatggtcatcgaaaaagccaagcgcttggtagagcacaagaaagatgtg
gtgattctgctcgactctatcacccgtttagcgcgtgcctacaacaccgtggtgcccagc
tccggcaaagtgctcaccggtggtgtggacgctcatgcccttgagaagcctaaacgtttc
ttcggtgccgcgcgtaatatcgaagagggcggtagcctgacgattattgccaccgcgcta
gttgatactggctcgaaaatggacgaagtcatcttcgaagagttcaagggcaccggtaat
atggaagcgcaccttgaccgcaagctagctgagaaacgcgtgttccctgcaatcaacatt
cgccgtagtggtactcgccgcgaagatctgctggcgtctgaagacgaaatgcagcgcatg
tggatccttcgcaagctgcttaacccgatggaagacaccgctgcgacagagttcttgatt
gatcgtctgaaagataccaagacgaatctggagttctttgaagcgatgaagcgacgctaa
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