Halomonas qinghailakensis: M0220_12545
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Entry
M0220_12545 CDS
T10463
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hqn Halomonas qinghailakensis
Pathway
hqn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hqn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
M0220_12545 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hqn03400
]
M0220_12545 (recB)
Enzymes [BR:
hqn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
M0220_12545 (recB)
DNA repair and recombination proteins [BR:
hqn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
M0220_12545 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
DUF4398
Motif
Other DBs
NCBI-ProteinID:
UYO73703
UniProt:
A0AA46YPH7
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All DBs
Position
complement(2712568..2716305)
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AA seq
1245 aa
AA seq
DB search
MSQADTPTPLNPLTLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGQHSEDDSAFVRPLT
PPEILVVTFTNAATQELRERIRHRLVEAAAVFRKAPGEPPADDPLLIQLRSQYTEATWPA
CARRLELAAEWMDEAAVSTIHSWCYRMLREHAFDSGSLFSLNLENDQCELEQEVVRDYWR
TFYYPLDADSLGSITRYWKSPDNLHEEVRKLLHESEALGSQRHAPAETLSTADAERSARL
EELKAPWRAWVNELRQLFDDGQTAKHFAPGKMRKDHRGKWLDKIQQWAESDLVSPDMDKK
ATAWKRLTPAGIAEIWNGEPPNHPAFEAFEALPAALNALPEPRNDLLIHAVQWCKVRMER
EQERRAEMGPNDLLTHLDRALQGPNKDALAAQILRQFPVALIDEFQDTDPIQYRIFNAVY
DVANPRRDAAMLLIGDPKQAIYAFRGADIFTYLQARQDTAGRHVTLGTNFRSSRAMVEAV
NHCFHYADQHPAGAFLFREEGGENPLPFLPVAAKGRDEQLVHQGQPLPAMTLWPLTSEEP
LSKTAYQTEMAECCASYMVELLAAGQGGNKESKSGFQKGDDFTPLKPSDMAVLVNGLQEA
RAIRLALASRGVKSVYLSDHDKVFSSPMAKQVERWLRACTEPLASSRQAEAHLRAALATP
VLGLSLADLDHLQQNELAWEARVEQFSHYHRLWQRQGVLPLVRRMMVDFDIPARLLGEFE
EGERLLTDLLHLGELLQQASAELDGEHALIRFLYEAIADPESHGDSHKLRLESDAELVKV
VTIHKSKGLEYPLVFLPFIANHRPVSDKDIPLRWHDAQGNLQLSLSADEETQATADRERL
GEDLRKLYVALTRARHATWLGLAPLQGVENSALGYLVSGGKTIAPAELTTALEALAQGSE
IVVSEPPAPTAQRLALSAQSAEQNATLGHARTPTRPAKEHWWIASYSALRLSGTLSAPTA
TPLEPTTAQEATAFEVLDEPQELSQLAQPDTFHLHKFPRGPGPGTFLHGLLEWAGRQGFE
AAANDHDSLNDMLWRRVQLRGWQAWQEPLAGWLSALLTTPLPLAAPNQQSVALTELTSYQ
VELEFWLAAQRVNTQAIDALVSKHLLPGVERPALDADTLNGMLKGFIDLAFEHQGRFYVL
DWKSNYLGPNDSDYEPDALRHALLAKRYDLQAALYLLAMHRLLKARLPNYDPHQHLGGSM
TVFLRGSRSPGRGVFSEHAPVELIEALDSLFAGASFSSPAQEATV
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggctgacacacccaccccactcaacccgctcacgctaccgcttcacggcagc
cgcttgattgaagccagcgcgggcacgggcaaaaccttcaccatcgcgttgctctacgtg
cgcctagtactgggcggccagcacagcgaagacgacagcgcgtttgtgcgcccgctcacc
ccgccggaaattctggtagtcacctttaccaatgccgccacccaggaactgcgtgaacgt
atccgccaccggctggtagaagccgccgcggtgtttagaaaagcaccgggcgagccaccc
gctgacgatcctttactcatccaactccgcagccaatacacagaggccacctggcccgcc
tgcgcccgccgcctggaactagccgccgaatggatggacgaagccgccgtttccaccatc
cacagctggtgctaccgcatgctgcgcgaacacgccttcgatagcggcagcctgttctca
ctcaacctggaaaacgaccagtgcgaactggaacaagaagtggtgcgcgactactggcgc
accttctattacccgctggatgccgactctctgggcagcattacccgctactggaaatcg
ccggataatctccatgaagaggtgcgcaagctgctccacgaaagcgaggcactgggcagc
caacgccacgcgccagcagaaacgttaagcactgccgacgccgaacgcagcgcacgcctt
gaagaactcaaagctccttggcgagcgtgggtaaatgaactacggcagctttttgacgat
ggccaaacagccaagcactttgcccctggcaaaatgcgcaaagatcatcgaggaaaatgg
ctggataaaattcagcaatgggcggaaagcgaccttgtcagtcctgatatggataagaag
gccactgcatggaagcgactgacaccggcaggcattgctgaaatctggaacggagagcca
ccgaaccacccagcgtttgaggcgtttgaggcactgcccgccgccctcaacgccttgccc
gaaccgcgcaacgacctgctgattcacgccgtgcagtggtgcaaggtacgtatggagcgc
gagcaagaacgccgcgccgaaatgggccccaacgacctgctcacccatttagaccgcgcc
ctgcaaggccccaacaaagacgccctggcagcgcagattctgcgccagttccccgtcgcg
ctaattgacgaattccaggacactgacccgattcagtaccgcatctttaacgcggtctat
gacgttgccaacccacgtcgcgacgccgccatgctgctgatcggcgaccccaaacaggcc
atctacgcctttcgcggtgcggatatcttcacctacctgcaggcccgccaagacaccgca
ggccgccacgtcacgctaggcaccaacttccgttccagccgcgccatggtggaagccgtc
aatcactgcttccactacgccgaccagcacccggctggggcgtttctatttcgcgaagaa
ggcggcgaaaacccgctgccgtttttgccggtagccgccaaaggccgcgacgaacagcta
gtccaccaaggccagccgctgcccgccatgacgctctggccgttaaccagcgaagaacca
ctttccaaaaccgcctaccaaaccgagatggccgagtgctgcgcctcttatatggtggaa
ctgctcgcggcaggccaaggtggcaataaagaaagcaaaagcggttttcagaaaggcgat
gacttcaccccgctaaagccttccgatatggcggtgctggtcaacggcctgcaggaagcc
cgcgccattcgcttagcgctggccagccgtggagtaaagagtgtttacctttccgaccac
gacaaggtgtttagctcgcccatggcgaagcaggtagaacgctggctgcgcgcctgcacc
gagccactggccagctcccgccaggccgaagcccacctgcgcgccgctttggcaacgcca
gtgttagggctcagtttggccgaccttgatcatctgcaacagaacgaactggcttgggaa
gcacgggtagagcaattcagccactaccaccgcctatggcagcgccagggtgtgctgccg
ctggtacgccgcatgatggtggatttcgatattccagcccgcttgctgggagaattcgaa
gagggtgagcgcttgctcaccgacctgctgcacttgggcgaactgctgcagcaggcaagt
gctgaactagacggcgaacacgcgctgattcgctttctgtatgaggccattgccgacccg
gaaagccacggcgacagccacaagctgcgcctagaaagcgatgcggagttggtcaaggtg
gtcaccatccacaaatccaaagggcttgagtaccctctggtatttctgccatttatcgcc
aaccaccgcccggtgagcgataaagacataccgctgcgctggcacgacgcccaaggcaac
cttcagctcagcctaagcgcggatgaagaaacacaggccactgccgaccgagaacgttta
ggggaagacctgcgcaagctttatgtagcgctgacccgcgcccgccacgcgacttggctg
gggctagccccgctccaaggggtggaaaatagcgccctcggctacctggttagcggcgga
aaaaccattgcaccggcagagctaaccaccgcgctggaagcgctggctcaaggcagtgag
attgttgtcagcgagccaccggcacccacggcccagcgccttgccctctctgcacaaagc
gccgaacaaaacgccacgcttgggcacgcccgcacgcccacgcgcccggccaaagagcac
tggtggattgccagctactcggcgctgcgcctttccggcacgctcagcgcccccacggca
acgcccctggaacccaccaccgcccaggaagccaccgcgtttgaagtattggatgagccc
caggaactatcccagttggcccagccagacactttccacctgcataagtttccaaggggg
ccagggccgggcacatttttgcatgggcttttggaatgggcaggcaggcaagggtttgaa
gccgctgccaacgaccacgattcactcaacgatatgctatggcggcgcgtgcagctgcgt
ggctggcaagcatggcaggaaccgctggctggctggctttcagcgctactcaccacaccg
ttgccgctggccgcgccgaaccaacaaagcgtcgcactgaccgaactcaccagctaccaa
gtagagctagagttctggctggccgcccaacgggtcaacacccaagcgattgatgcgctg
gtcagcaagcacttactgccaggggttgagcgcccagcgctggatgccgataccctaaac
ggcatgctgaaaggctttattgatttagcctttgagcaccaagggcgcttttacgtgctg
gactggaaatcgaactatttagggccgaatgacagcgattacgaaccggacgccttgcgc
catgcgttgctggccaaacgctacgacctccaggccgcgctttacctgctagctatgcat
cggctgctcaaagcgcgcctgcccaattacgacccgcaccagcatctaggcggttcgatg
acggtatttctacgcggcagccgcagcccagggcgcggggtattttccgagcacgccccg
gttgaactgatcgaagcactggatagcctgtttgcaggcgcatcgttttcaagccccgca
caggaagcgacggtatga
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