Halomonas qinghailakensis: M0220_14990
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Entry
M0220_14990 CDS
T10463
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hqn Halomonas qinghailakensis
Pathway
hqn03018
RNA degradation
Brite
Enzymes [BR:
hqn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M0220_14990 (rne)
Messenger RNA biogenesis [BR:
hqn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M0220_14990 (rne)
Ribosome biogenesis [BR:
hqn03009
]
Prokaryotic type
rRNA processing factors
M0220_14990 (rne)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UYO74165
UniProt:
A0AA46YQ64
LinkDB
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Position
complement(3305826..3309218)
Genome browser
AA seq
1130 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITTEAGKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVLLPNPEMDTPHY
DVQRLRDDHLDDDESLTLSSFELSTDTEVGKEPDPSFTPPAMRAEAAVKSVVHNAPAPAS
LQTEEKAEKVTKADKVVAATTPVAEEQPSVIGRFIRGFAKLLGGEDSSTSEPKQEAPVAR
KQPEKTGSNRTQRSESKPKPARERGESTSKNEQRSQQQPSNQQPSQPRNTDNNDDANDKR
SGPSRTRNRRRHPQQDDAKTLDNDQKSSRQKEQQTNQAAKESPKDEPAKPTAQPESRRDK
PRDAKQKNETTREPASQTDDKQDDGKPKRTRNNPRNRTRKQAVNPQAEAEQLKLQAEAAE
ATSAEAPSAESPAVEVPSSEAASASPSSHDEASTTAVPSDEVATEAPDQAVEETTVADGT
TAERPAEKADKARKATRQRRQPQKTEDNAETAATEASVEKSSEDKPQQPTDDQTTVQEAP
QEANSRSSEVENIEPSSVNTEVEPQEEPAANVKEFDTAHSESTSSRDEETTQETDKPQQP
TPQELVRQEPVLPQVTQETAQETSAPASTQAEVPKVAEDETVDSTDNRQVPSHDVAASTE
ASSPETAEQPEASSDNNAESNTNASDTKTAPEAADITATDQESDLQPTLANNEEEAQTPS
PEAPETVTPEEAQQVTTVSTQDEVPKPRRRRRAHNDPRELRKQAQNTTNE
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctaattaacgcaacccagccagaagagcttcgggttgcactggtagac
gggcaacgcctttacgatttagacatcgaatctggcgcccgagagcagaaaaaagccaat
atttaccggggtaagatcacccgagtagaaccctcccttgaagccgcttttgttgatttc
ggtgccgagcgtcatggctttctgccgttaaaagaaatttcccgcgaatattttattaaa
gatgtttctggccgccccagcatcaaagaagtgctgaaagaaggacaggaagttattgtc
caagttgataaagaagagcgcggcaataaaggtgctgcactcactacttttattagctta
gcgggtcgctttcttgtactgatgcctaacaaccctcgcgcgggtggcatttcacgccgc
attgaaggtgatgaccgcagccaactgaaagacgccatgggccaactgacagtgccggac
aaaatgggcctgatcgttcgcaccgctggtatcggccgcagcccggaagagcttcagtgg
gatctggattacctcgtccaagtgtgggaatccatcaccactgaggcaggcaagcgttcg
gcccctttcctgatctatcgcgaatctaatgtcattattcgcgccatgcgtgattacctg
cgccaagacattggcgaagtgttaattgacagccctgagattcatgcagaagcgctgggc
tttattcgtcaggtaatgccttcttaccagcagaaaattaaactttacgcagatgaagtc
cctcttttctcgcgctttcaaattgagtcgcaaatcgaaactgcttaccagcgcgaagta
aaacttccttctggtggctctattgttatcgatcacaccgaagcactggtctctattgat
atcaactctgcccgggctacacgtggcagcgatattgaagaaaccgcactgcaaactaac
tctgaagcagctgacgagattgctcgacagttgcgcttgcgtgatatcggtggccttgta
gttatcgactttatcgatatgggccctgcgcgaaatcagcgcgaggttgaaaaccgcatg
cgcgatgcgctgaagcttgatcgtgcacgcgttcagattggtcggatttcacgctttggc
ttaatggagatgtcgcgccagcgcttacgtccttcgcttggtgagaccagcggtgtggtt
tgcccacgttgtaacggccagggcacgattcgtgacgtacgctcattgtcgctctccatt
atgcgcctgattgaagaagaggcgatgaaagagcgcagcgctcaaattcgcgctattctg
ccggtaccagtggctacctacctgctgaacgaaaagcgtagcgttctagcagacatcgaa
tcacgccaaggcgtgcgggtagttcttttgccgaatcccgaaatggatacgccgcattat
gacgttcagcggctgcgtgatgaccacttagacgatgacgagagcctaacgctatccagc
ttcgagctatcgactgatactgaagtgggcaaagaaccagacccaagctttactccgccc
gccatgcgcgctgaagccgcggttaaaagtgttgtgcataacgcaccagcgcccgcctct
cttcagacagaagagaaggcagagaaggttacaaaagcagacaaagtcgttgctgcgacc
acccctgttgctgaagagcagcctagtgtgattggccgctttatcagaggctttgccaaa
ctgctagggggggaagatagcagcacgagcgagcctaaacaggaagctcctgttgcccgt
aagcagcctgaaaaaacaggcagcaaccgcacgcagcgcagcgaaagcaagccaaagccg
gctcgtgaacgtggcgaaagcactagcaaaaacgagcaacgcagccagcagcagccgagt
aatcagcaacctagccaaccgcgtaatactgataataacgacgacgctaacgacaaacgc
agcggtcctagccgtactcgtaatcgtcgacgccaccctcagcaagacgatgccaagacc
ctagacaacgaccagaagagcagtcgtcaaaaagaacagcagacaaatcaagcggccaaa
gaatcgcctaaagatgagccagctaaacctactgctcaaccagaaagccgtcgtgataaa
ccgcgtgatgcaaagcagaaaaacgaaactacccgtgagcctgcatcacaaacggacgac
aaacaagatgacggcaaaccgaagcgcacgcgtaataatccgcgtaaccgcacgcgtaaa
caggccgttaaccctcaagccgaagcggaacagctgaaactgcaagccgaagcggctgaa
gccacctctgcggaagccccttctgctgaatcacccgctgttgaagtacccagcagcgaa
gcagcgtctgcaagcccctcttcacatgatgaggccagcacaacagcggtgccaagcgat
gaagtagcgactgaagcgcctgaccaagctgtagaagaaacaacagttgccgatggaaca
acggctgagcgccctgctgaaaaggcagataaagcacgtaaagctactcgccagcgtcgt
caaccgcagaaaacggaagataacgctgaaactgccgcaacagaagcgagcgtagagaaa
agctctgaggataaacctcaacagccgactgatgaccaaaccactgttcaagaagcgcct
caagaggctaacagccgctcgtctgaggtcgagaatattgaaccttcgtcagttaatacg
gaagtagagccacaggaagagcctgctgcaaacgtgaaggagtttgataccgcccatagc
gaatcaacaagctcacgtgatgaagaaactacacaagagactgataagccccagcagccg
acacctcaagaacttgtgcgccaggaaccggtgttgcctcaagtgactcaagagacagca
caagaaacatcagcacccgctagcacacaggcagaagtgccaaaagttgctgaggacgag
actgtcgatagcactgataaccgtcaggtgccctcgcacgacgtagcggctagcactgag
gccagctcaccagagacagctgagcaaccggaagcttcttcagacaataacgcggagagc
aatacgaacgcttcagacactaaaaccgcgccagaagccgctgacattactgctactgat
caagaaagcgatcttcagcctacgttagcgaacaatgaagaagaggctcaaacgccttca
ccagaagctcccgaaacagtaacacctgaagaagcacagcaagtgactaccgtttctaca
caagacgaagtacccaagccacgtcgccgtcgtcgcgctcataacgatcctcgtgaactg
cgtaaacaagcacagaacacgacgaatgagtga
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