Halomonas qinghailakensis: M0220_17140
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Entry
M0220_17140 CDS
T10463
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hqn Halomonas qinghailakensis
Pathway
hqn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hqn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M0220_17140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hqn03019
]
M0220_17140
Enzymes [BR:
hqn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M0220_17140
Messenger RNA biogenesis [BR:
hqn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M0220_17140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
AAA_22
Gag_p24
Sacchrp_dh_NADP
FANCF
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
UYO74561
UniProt:
A0AA46TQU1
LinkDB
All DBs
Position
3767328..3768581
Genome browser
AA seq
417 aa
AA seq
DB search
MSFSELGLHDDLLRAVTAQGYTQPTPIQQKAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLANGKRPGKRQVRALVLTPTRELAAQVGESVTAYGKHLSLRSHIIFGGVGQQPQVDAL
KAGLDVLVATPGRLLDLQQQGHVDLSAVEILVLDEADRMLDMGFIHDIKRLLRLVPKQRQ
NLLFSATFSNEIQLLAQQLLNNPALIEVAPRNTTAEKIEQTIYRVDRDKKRELLAHLIQQ
HGWFQVLVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQGARTRALGAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSDGEAVSLVCVDEHGLLSGIER
LIKQNLPKRIEPGFEPDPNAKPEPIENGRRGQKQPRAKRKPEGQAANKGGERRRARR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgagcttttctgaacttggtctgcacgacgatttactccgcgcggttaccgcgcagggc
tatacacagcctacccctattcaacaaaaagccattcccgtcgtgcttgaaggacgtgac
atgcttgccagtgcgcaaacgggcacaggcaaaaccgctggttttacgttacctatgtta
cagcggttagcgaatggcaaacgacccggtaaacgccaagtacgcgcgttagtacttacc
cctacgcgtgagcttgctgcccaagtaggcgaaagcgtgactgcttacggcaagcatctc
tctttgcgctcgcatattattttcggcggcgttggccaacaaccacaagttgatgcactt
aaagcgggacttgatgtattggtagccaccccaggccggctgctcgacttacaacaacaa
ggccacgtcgatctctcagccgtggagatcctggtactcgatgaagctgatcgcatgctt
gatatggggttcattcatgatatcaagcgactattacgcttagtgcctaaacagcgtcaa
aacctactgttttcggcaacattttctaacgaaatacagttattggcgcaacagctgctc
aacaatccagcgttaatagaagtcgcacctcgcaatacgaccgctgaaaagattgagcaa
actatttaccgggtagatcgcgataaaaagcgcgagctgttggcgcatttgattcagcag
catggttggtttcaagtactcgtttttacgcgtaccaaacatggcgcaaatcgcttagca
gaacagctttctaagcaagacatacccgctatggccatccacggcaataaaagccaaggt
gctagaacacgggcgttgggggcgttcaaaagcggtgatttacaagtactcgtcgccacc
gatattgccgctcgtgggttagatatcaacgaacttccccatgtcgttaatttcgactta
cccaatgtggcagaagactatgtgcaccgtattggacgtaccggccgagcgggcagcgat
ggagaagcagtttcactcgtatgtgtcgacgaacacggcttgctgagtgggattgagcgg
cttattaagcaaaatctgcctaaacgtatcgaacctggttttgaacctgatcccaacgcc
aagcctgaaccaattgaaaatggccgacgtggccaaaaacagccccgtgccaagcgtaaa
ccggaagggcaagcggcgaacaaaggcggtgaacgtcgccgcgcccgtcgctag
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