Herbaspirillum rubrisubalbicans: Hrubri_0120
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Entry
Hrubri_0120 CDS
T04238
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Hrubri_0120 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrb03021
]
Hrubri_0120 (rpoC)
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_0120 (rpoC)
Enzymes [BR:
hrb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Hrubri_0120 (rpoC)
Transcription machinery [BR:
hrb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Hrubri_0120 (rpoC)
DNA repair and recombination proteins [BR:
hrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Hrubri_0120 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ALU87349
UniProt:
A0A0U3BBK9
LinkDB
All DBs
Position
137431..141672
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM
GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK
EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI
LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA
TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGSSSKVMRPQV
KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE
RAALLEAERASRSEFADEEVSSTESIGGGESEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtccagcaaaacgaacaattcgacgcgatc
aagatcggtctggcttcgcctgacaagatccgctcgtggtccttcggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgtggaagtgaccctggccaaggtgcgccgtgag
cgcatgggccacatcgagctggcttccccgactgcccacatctggttcctgaagtcgctg
ccatcccgtctgggcatggtgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtgaccgatcccggcatgaccccgctgaagaagtgccagatcatg
tccgaagacgactacgccgccaagtacgaagagtacggcgacgacttcatcgccttcatg
ggcgccgaaggtatccgcgaactgctgcgctcgatcgacatcgaccgcgaagcggaaacc
ctgcgccaggaactgaaggactccaagtccgaagccaagatcaagaagtacgccaagcgc
ctgaaggtgttggaggcgttccagcgttcgggcatcaagcccgagtggatgatcatggaa
gtgctgcccgtgctgccgccggaactgcgtccgctggtgccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaag
cgtttgatggaactgcgcgcgcctgaaatcatcacgcgcaacgaaaagcgcatgttgcag
gaagccgtggactcgctgctggacaacggtcgtcgcggcaaggccatgaccggcgccaac
aagcgtccgctgaagtcgctggccgaaatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggtccgcag
ctcaagctgcaccagtgcggcctgcccaagctgatggccctggaactgttcaagcccttc
atcttcaacaagctggaactgatgggtctgtcgaccaccatcaaggccgccaagaagctg
gtggaagcgcaagagccggtggtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctcaaccgcgcaccgaccctgcaccgtctgggcatccaggcgttcgagccggtc
ctgatcgaaggcaaggcgatccagctgcacccgctggtgtgcgccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgatcgaagcgcagatggaagcc
cgcaccctgatgctggcctccaacaacatcctgttcccgtccaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactatgccacccgtgaagccatcaacggc
aagaacgaaggcatgatgttccaggacgtgtcggaagtcatccgcgcttacgacaacaag
gaagtcgagctggccacccgtatcacggtgcgtatcgtggaacatccgaaggacccggtc
accggcgaattcgtgcgtaccgtcaagcgctacgagaccaccatcggccgcgccatcctc
tccgagatcctgcccaagggcctgccgttctcggtgctgaaccgcgcgctgaagaagaag
gaaatctccaagctcatcaacacgtccttccgcaagtgcggtctgcgtgccaccgtggtg
tttgctgaccagctgatgcagtcgggcttccgcctggcgacccgcgccggtatctccatc
tgcgtggacgacatgctggtgccgccgcaaaaggccaccctgatcgccgctgccgagtcc
gaagtcaagcagatcgaacagcagtactcctcgggtctggtgaccgcaggcgagcgctac
aacaaggtggtggacatctggggcaaggccggtgacgaagtcggcaaggccatgatggac
cagctgaaggtggaagacgtcatcacccgcgaaggcaagaagaccacccaagaatcgttc
aacgcgatttacatgatggccgactccggcgcccgtggttcggctgcccagattcgccag
ctggccggtatgcgcggcctgatggccaagcctgacggctccatcatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacgcacggcgcc
cgtaagggtctggccgacaccgcgctgaagaccgcaaactccggctacctgacccgtcgt
ctggtggacgtgacccaggatctggtcgtgatcgaagacgattgcggcacttccaacggt
tcggccatgaaggcgctggtcgaaggcggtgaagtcatcgaagccctgcgcgaccgtatc
ctcggccgtgtggctgcgaccgacatcgtcaacccggaagatcaatccaccctgttcgaa
gccggcaccctgctggacgaagacaaggtcgaagagatcgaacgcatgggtatcgacgaa
gtgaaggttcgtactccgctgacctgcgacacccgctatggcctgtgcgccaagtgctat
ggccgcgacctgggccgtggcctcttggtgaactccggcgaagccgtcggtgtggtggct
gcgcaatccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgtgcagcggtggcctcctcggtggaagccaagtccaacggcaccgtgcgc
ttcaccgccacgatgcgttacgtgaccaatggcaagggcgaacagatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgacctgggccgtgagcgcgagcgtcacaaagtgccg
tacggcgccaccctgatcgtcaaggatggcctgaccatcaaggccggtactgccctggca
acctgggatccgctgacccgtccgatcatcaccgagtactccggtaccgtgaagttcgaa
aacgtggaagaaggctccaccgtggccaagcagatcgacgaagtcaccggtctgtcgacc
ctggtggtcatcgatgccaagcgtcgtggttcgtcctccaaggtcatgcgtccgcaggtg
aaactgctgaacgaacaaggcgaagaagtgaagatcgccggcaccgaacactcggtgacc
atcggcttccaggtcggcgcgctgatcaccgtcaaggacggccagcaggtgcatgtgggt
gaagtgctggcccgtatcccgaccgaatcgcagaagacccgtgacattaccggtggtctg
ccgcgcgtggccgaactgttcgaagcccgttcgcccaaggacgccggtatgctggccgaa
gtcactggtaccgttgccttcggcaaggaaaccaagggcaagcagcgtctggaaatcacc
gacatggaaggcaccaagcacgagttcttgatcaccaaggacaagcaagtgctggtgcac
gacggccaggtggtgaacaagggtgaaatgatcgtggacggtccggctgacccgcaggac
atcctgcgcctgttgggtatcgaagcgctggctcgttacatcgtcgacgaagtgcaggac
gtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgcgtgcaagtggtggagccgggcgacaccaactacatcaccggtgagcag
gtcgagcgctccgaactgctggacgagaacgaccgcgtgaccgccgaaggcaagatcccg
gcgacctacgaaaacgtgctgctgggtattaccaaggcatcgctgtcgaccgactccttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggc
aagaaggatggcctgcgcggtctgaaggaaaacgtcatcgtcggccgcctgatcccggcc
ggtactggcctggccttccaccgcgcccgcaaggaaaaggatgcatgggaagccgaagag
cgcgcagcactgctcgaagccgaacgtgcctcccgttccgagttcgccgacgaggaagtc
tcctcgaccgaatccatcggtggcggcgaaagcgaagcgtaa
DBGET
integrated database retrieval system