KEGG   Herbaspirillum rubrisubalbicans: Hrubri_0120
Entry
Hrubri_0120       CDS       T04238                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
hrb  Herbaspirillum rubrisubalbicans
Pathway
hrb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hrb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Hrubri_0120 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hrb03021]
    Hrubri_0120 (rpoC)
   03400 DNA repair and recombination proteins [BR:hrb03400]
    Hrubri_0120 (rpoC)
Enzymes [BR:hrb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Hrubri_0120 (rpoC)
Transcription machinery [BR:hrb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Hrubri_0120 (rpoC)
DNA repair and recombination proteins [BR:hrb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Hrubri_0120 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: ALU87349
UniProt: A0A0U3BBK9
LinkDB
Position
137431..141672
AA seq 1413 aa
MKALLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFIAFM
GAEGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNK
EVELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI
LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA
TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGSSSKVMRPQV
KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMEGTKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAEE
RAALLEAERASRSEFADEEVSSTESIGGGESEA
NT seq 4242 nt   +upstreamnt  +downstreamnt
atgaaagcactgctcgatctattcaagcaagtccagcaaaacgaacaattcgacgcgatc
aagatcggtctggcttcgcctgacaagatccgctcgtggtccttcggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcggccccatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgtggaagtgaccctggccaaggtgcgccgtgag
cgcatgggccacatcgagctggcttccccgactgcccacatctggttcctgaagtcgctg
ccatcccgtctgggcatggtgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtgaccgatcccggcatgaccccgctgaagaagtgccagatcatg
tccgaagacgactacgccgccaagtacgaagagtacggcgacgacttcatcgccttcatg
ggcgccgaaggtatccgcgaactgctgcgctcgatcgacatcgaccgcgaagcggaaacc
ctgcgccaggaactgaaggactccaagtccgaagccaagatcaagaagtacgccaagcgc
ctgaaggtgttggaggcgttccagcgttcgggcatcaagcccgagtggatgatcatggaa
gtgctgcccgtgctgccgccggaactgcgtccgctggtgccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgaag
cgtttgatggaactgcgcgcgcctgaaatcatcacgcgcaacgaaaagcgcatgttgcag
gaagccgtggactcgctgctggacaacggtcgtcgcggcaaggccatgaccggcgccaac
aagcgtccgctgaagtcgctggccgaaatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtgggtccgcag
ctcaagctgcaccagtgcggcctgcccaagctgatggccctggaactgttcaagcccttc
atcttcaacaagctggaactgatgggtctgtcgaccaccatcaaggccgccaagaagctg
gtggaagcgcaagagccggtggtctgggacatcctggaagaagtcatccgcgaacacccg
gtcatgctcaaccgcgcaccgaccctgcaccgtctgggcatccaggcgttcgagccggtc
ctgatcgaaggcaaggcgatccagctgcacccgctggtgtgcgccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgatcgaagcgcagatggaagcc
cgcaccctgatgctggcctccaacaacatcctgttcccgtccaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactatgccacccgtgaagccatcaacggc
aagaacgaaggcatgatgttccaggacgtgtcggaagtcatccgcgcttacgacaacaag
gaagtcgagctggccacccgtatcacggtgcgtatcgtggaacatccgaaggacccggtc
accggcgaattcgtgcgtaccgtcaagcgctacgagaccaccatcggccgcgccatcctc
tccgagatcctgcccaagggcctgccgttctcggtgctgaaccgcgcgctgaagaagaag
gaaatctccaagctcatcaacacgtccttccgcaagtgcggtctgcgtgccaccgtggtg
tttgctgaccagctgatgcagtcgggcttccgcctggcgacccgcgccggtatctccatc
tgcgtggacgacatgctggtgccgccgcaaaaggccaccctgatcgccgctgccgagtcc
gaagtcaagcagatcgaacagcagtactcctcgggtctggtgaccgcaggcgagcgctac
aacaaggtggtggacatctggggcaaggccggtgacgaagtcggcaaggccatgatggac
cagctgaaggtggaagacgtcatcacccgcgaaggcaagaagaccacccaagaatcgttc
aacgcgatttacatgatggccgactccggcgcccgtggttcggctgcccagattcgccag
ctggccggtatgcgcggcctgatggccaagcctgacggctccatcatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacgcacggcgcc
cgtaagggtctggccgacaccgcgctgaagaccgcaaactccggctacctgacccgtcgt
ctggtggacgtgacccaggatctggtcgtgatcgaagacgattgcggcacttccaacggt
tcggccatgaaggcgctggtcgaaggcggtgaagtcatcgaagccctgcgcgaccgtatc
ctcggccgtgtggctgcgaccgacatcgtcaacccggaagatcaatccaccctgttcgaa
gccggcaccctgctggacgaagacaaggtcgaagagatcgaacgcatgggtatcgacgaa
gtgaaggttcgtactccgctgacctgcgacacccgctatggcctgtgcgccaagtgctat
ggccgcgacctgggccgtggcctcttggtgaactccggcgaagccgtcggtgtggtggct
gcgcaatccatcggtgagccgggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgtgcagcggtggcctcctcggtggaagccaagtccaacggcaccgtgcgc
ttcaccgccacgatgcgttacgtgaccaatggcaagggcgaacagatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgacctgggccgtgagcgcgagcgtcacaaagtgccg
tacggcgccaccctgatcgtcaaggatggcctgaccatcaaggccggtactgccctggca
acctgggatccgctgacccgtccgatcatcaccgagtactccggtaccgtgaagttcgaa
aacgtggaagaaggctccaccgtggccaagcagatcgacgaagtcaccggtctgtcgacc
ctggtggtcatcgatgccaagcgtcgtggttcgtcctccaaggtcatgcgtccgcaggtg
aaactgctgaacgaacaaggcgaagaagtgaagatcgccggcaccgaacactcggtgacc
atcggcttccaggtcggcgcgctgatcaccgtcaaggacggccagcaggtgcatgtgggt
gaagtgctggcccgtatcccgaccgaatcgcagaagacccgtgacattaccggtggtctg
ccgcgcgtggccgaactgttcgaagcccgttcgcccaaggacgccggtatgctggccgaa
gtcactggtaccgttgccttcggcaaggaaaccaagggcaagcagcgtctggaaatcacc
gacatggaaggcaccaagcacgagttcttgatcaccaaggacaagcaagtgctggtgcac
gacggccaggtggtgaacaagggtgaaatgatcgtggacggtccggctgacccgcaggac
atcctgcgcctgttgggtatcgaagcgctggctcgttacatcgtcgacgaagtgcaggac
gtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgcgtgcaagtggtggagccgggcgacaccaactacatcaccggtgagcag
gtcgagcgctccgaactgctggacgagaacgaccgcgtgaccgccgaaggcaagatcccg
gcgacctacgaaaacgtgctgctgggtattaccaaggcatcgctgtcgaccgactccttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggc
aagaaggatggcctgcgcggtctgaaggaaaacgtcatcgtcggccgcctgatcccggcc
ggtactggcctggccttccaccgcgcccgcaaggaaaaggatgcatgggaagccgaagag
cgcgcagcactgctcgaagccgaacgtgcctcccgttccgagttcgccgacgaggaagtc
tcctcgaccgaatccatcggtggcggcgaaagcgaagcgtaa

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