Herbaspirillum rubrisubalbicans: Hrubri_0379
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Entry
Hrubri_0379 CDS
T04238
Symbol
vacB
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hrb03016
]
Hrubri_0379 (vacB)
Enzymes [BR:
hrb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Hrubri_0379 (vacB)
Transfer RNA biogenesis [BR:
hrb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Hrubri_0379 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
ALU87607
LinkDB
All DBs
Position
429183..431276
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AA seq
697 aa
AA seq
DB search
MNLLFEESGDFKAGSIMTQQGESYQVEMASGKRAKVKSRDALLQFAAPSPQELLQQAQAI
AEEIDLDFLWEVAGEEEFGFTDLAAEYFGHAPLPPEAAGLLLRLHHAPIYFYKKGRGRYK
AAPQASLQAALAGLEKKKQQLAAQAVYVEELKAHKLPEAFRPIALQLLFKPDKNGIEFKA
LDAAAKELQTTPQRLMLAAGGVASPKDLHYARFLYEFFPRGTGFPAIDIPTPPGDLPLAD
VQAFSIDDVTTTEIDDALSVTRLPDGKLRVGIHIAAPALAIKRGDAIDAIARARMSTVYM
PGEKITMLPDDLVATYTLDAGAARPALSLYATLDAGTWEVLATETRAERVPIAANLRHND
LDELVTEEALADNRGDYPHKEEISLLWQWAQLLEQGRMAKRESFGLRPEQNNRVDFNFYV
DNDVVSIVRRRRGAPLDKIVAELMIFANSTWGKLMADHGVPGIYRAQGGGAGGWAAKMQV
RMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACVEHGVTAPLVAPFKPRDADLF
AIVSGFDAAYSGYADFQSTMERYWCLRWLAQENARTVEAVVLKDEILRLVDIPLVLRMPG
LPQLARGLQVKLDLLRWDEVDLSVEARLLEVPTAAAQALASDLGEEDEELLEGMAALGAE
QQEGSEAAEEGSATQDAPPEGADTVQDGENRSAEAAQ
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaatttactgttcgaagaatccggcgacttcaaggccggctccatcatgacccagcag
ggcgagtcctaccaggtcgagatggcctccggcaagcgcgccaaggtcaagtcgcgcgat
gcgctgctgcaattcgctgctccctcgccgcaggaattgctgcaacaggcgcaagccatc
gccgaggagatcgacctggatttcctgtgggaagtggctggtgaagaagagttcggcttc
accgacctggccgccgagtatttcggccatgccccgctgccgcctgaagcggccggcctg
ttgctgcgcctgcatcatgcgccgatctatttctacaagaagggccgtggccgctacaag
gctgccccgcaagcctcgctgcaggcggccctggccgggctggaaaagaagaagcagcaa
ctggccgcgcaagcggtatatgtcgaggagttgaaggctcacaagttgcctgaggccttc
cgccccatcgctttgcaattgctgttcaagccggacaagaacggcatcgagttcaaggca
ctggacgctgccgccaaggaactgcagaccaccccgcagcgcctgatgctggccgccggc
ggcgtggcttcgcccaaggatctgcactatgcgcgcttcctgtatgaattcttcccgcgc
ggcacgggttttccggccatcgatatccccaccccgcccggcgacctgccgctggccgat
gtgcaggccttctccatcgatgacgtcaccactaccgaaatcgacgatgccctgtcggtg
acccgcctgcccgacggcaagttgcgcgtgggtatccacatcgccgcgccggccctggcc
atcaagcgcggcgacgccatcgatgcgattgcccgcgcccgcatgtccaccgtctacatg
cccggtgaaaagatcaccatgctgcccgacgacctggtggctacctataccctggacgcc
ggtgctgcacgaccggcgctctcgctctatgccacgctggacgctggcacctgggaagtg
ctggccaccgaaacccgcgccgaacgcgtgcccattgccgccaacctgcgccacaacgac
cttgatgagctggtcaccgaagaagcgctggccgacaatcgcggcgactatccgcacaag
gaagaaatctccctgctgtggcaatgggcgcaattgctggaacagggccgcatggccaag
cgcgagagcttcggcctgcggccggagcagaacaatcgcgtcgacttcaacttctatgtc
gacaacgacgtggtcagcatcgtgcgccgccgccgtggcgcgccgctggacaagatcgtg
gccgagctgatgatctttgccaacagcacctggggcaagctcatggccgatcatggcgta
cccggcatctatcgcgcccagggtggcggcgccggtggctgggccgccaagatgcaggtg
cgcatggtgacccacgccgcgccccatcagggcctgggtgtggatcaatatgcctggagc
acctcgccgctgcgccgctataccgacctggtcaaccaatggcagatcctggcctgtgtc
gagcatggcgtgacggcgccgttggtggcgcccttcaagccgcgcgatgccgacctgttc
gccatcgtctcgggctttgatgccgcctattccggctatgccgacttccagtccaccatg
gaacgttactggtgcctgcgctggctggcccaggaaaacgcccgcaccgtggaagcggtg
gtattgaaggatgaaatcctgcgcctggtcgacatccccttggtattgcggatgccgggc
ctgccgcaactggcgcgtggcctgcaggtcaagctggacctgctgcgctgggatgaggtg
gacttgagcgtggaggcgcgcctgctggaagtgcctaccgctgccgcccaggcgctggcc
agcgacctgggggaagaggatgaggagttgctggaaggcatggctgcgctcggcgccgag
cagcaggagggtagcgaggccgcagaagaaggcagcgccacgcaagacgccccgccagag
ggcgccgacacggtgcaagacggcgaaaaccgtagcgccgaagcggcgcaatga
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