Herbaspirillum rubrisubalbicans: Hrubri_0400
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Entry
Hrubri_0400 CDS
T04238
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_0400 (phrB)
Enzymes [BR:
hrb01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Hrubri_0400 (phrB)
DNA repair and recombination proteins [BR:
hrb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Hrubri_0400 (phrB)
Prokaryotic type
Hrubri_0400 (phrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
Motif
Other DBs
NCBI-ProteinID:
ALU87628
LinkDB
All DBs
Position
449779..451089
Genome browser
AA seq
436 aa
AA seq
DB search
MYRKHQFDLLLDTPDPDDATAPLTSPVTPVPLAVLAVLPTLAAARERIAAVHPGAYARTR
NSLDGAVTGLSPYLTHGMVSLREVLAGVCSRHALEVQHKFVYELGWRAFYRYVWARRGAR
IFDSLHGGPLPDAAYARELPADIRAGATGLPVIDQAVRTLYQTGTLHNHARMWLASYVVH
LRKVHWRAGADWLVGHLLDGDLASNHLSWQWVAGTGSHKPYLFNAENVARYAPVEWHSPG
TVVDTSYEALGAIALHPDPVAAEPAQRARESCQEPALLSAPPEHLCSVAPAAPAVAGRDV
WLVHPWSLGELPADLPADTLVLGLYLSDFHLLWPWAPRRWAFVGARMKEMTALCWHGDAA
SVGRALKAARSVRCQVDPHLAPWLPLWAQCVNPPALFPPVDKPCDLFTQWWRRSTQGLQT
AAQLLARQNGRERCDG
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgcaaacaccaattcgacctgttgctggatacgcctgacccggacgatgcgact
gcgccgctcacctctcccgtgacaccggtgcccctggccgtgctggccgtgctgcccacc
ctggctgccgcccgcgagcgcatcgccgccgtgcatccaggcgcctatgcacgtacccgc
aatagcctcgatggcgccgtcaccgggctgtcgccctatctcacgcatggcatggtcagc
ctgcgcgaggtgctggccggggtatgcagtcgtcatgcgctggaggtgcagcacaagttc
gtctatgaactgggttggcgcgccttctaccgctacgtctgggcgcgtcgcggggcgcgc
atcttcgactcgctgcatggcggccccttgcccgacgcggcctatgcccgcgaactgccg
gccgacatccgcgccggggccaccggcctgccggtgatcgaccaggccgtgcgtaccctc
tatcagaccggcacgctgcacaaccatgcccgcatgtggctggccagctacgtggttcac
ctgcgcaaggtgcattggcgtgccggcgcggactggctggtgggtcacttgctggatggc
gacctggccagcaaccacctgagctggcaatgggtggccggcaccggcagccacaagccc
tatctcttcaatgccgagaacgtggccagatacgctccggtcgagtggcatagccctggc
acggtggtggatacctcctatgaagctttaggcgcaatagcgctccatcccgacccggtg
gccgccgaacccgcccagcgggcgcgcgagagctgccaggagccagccctgctgtcagca
ccacctgaacatttgtgcagcgtggcaccggcggccccagccgtggccgggcgcgatgtc
tggctggtccatccctggagcctgggcgagttgcccgctgatctgccggccgataccctg
gtgctgggcctctatctgtcggatttccacctgctgtggccctgggcgccgcggcgttgg
gccttcgtcggcgcccgtatgaaggaaatgaccgccttgtgctggcatggcgatgccgcc
agcgtcgggcgcgccttgaaagccgcgcgcagcgtgcgctgccaggtcgatccccatctt
gcgccgtggctgccgttgtgggcgcaatgcgtcaatccacccgcattgttcccgccggtg
gacaagccctgtgacctgttcacccaatggtggcggcgcagcacccagggtctgcagacg
gcagcccaattgctggcgcgtcagaatgggcgggagcggtgcgatggataa
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