Herbaspirillum rubrisubalbicans: Hrubri_0418
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Entry
Hrubri_0418 CDS
T04238
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03420
Nucleotide excision repair
hrb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hrubri_0418 (uvrD)
03430 Mismatch repair
Hrubri_0418 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_0418 (uvrD)
Enzymes [BR:
hrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hrubri_0418 (uvrD)
DNA repair and recombination proteins [BR:
hrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hrubri_0418 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
Hrubri_0418 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ALU87646
LinkDB
All DBs
Position
467562..469841
Genome browser
AA seq
759 aa
AA seq
DB search
MQNLLHNLNEEQLAAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTF
TNKAAKEMTARLSAMLPINTRGMWIGTFHGLCNRLLRAHHKDAGLPQTFQILDTQDQLSA
IKRLLKQMNVDDEKYPPRNLMYFINSAKDQGLRAKDVDAYDDYNRKFVELYELYDQQCQR
EGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYKWLKLMAGQHGAV
FAVGDDDQSIYAFRGANVGNMQAFEQEFHVQNLIKLEQNYRSHGHILDTANELIANNSKR
LGKNLRTDAGHGEQVRVYEATSDLQEAQWIIEQVKDLIAEGWARSEIAILYRSNAQSRVL
EHALFSSAIPYRVYGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGAKAM
ESLQDAARQYGCSLYAAVPYVAGKAGSSLNAFIKLIEGARFETQHLPLPETVKVVLDLSG
LITHYRNEKEGADRIENLEQLVSAATLFVSEEGYGLDAPAFLGPQAQAAAGTAITTADGV
EVLDADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGM
EEGLFPHENSAKEEGGVEEERRLMYVAITRARKRLFMTFSQTRMLHGQTRYNMRSRFFDE
LPEQSIKWLSPKIAQHHWFANPKPAWDEVPEAGNNKIAQSFSRQTDSGWRIGQNVSHAKF
GEGVIVNIEGGGGAARAQINFGKFGMKLLDLSVAKLEKI
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcttctccacaacctcaatgaagagcaactggccgccgtgacactgccggcg
caatcggcgctgatcctggccggcgccggctccggcaagacccgcgtgctgaccacccgc
atcgcctggctgatccagaccgggcaggtctcgccctcgggcatcctggcggtgaccttc
accaacaaggccgccaaggaaatgaccgcgcgcctgtcggccatgctgcccatcaatacc
cgcggcatgtggatcggcaccttccacggtctgtgcaaccgcttgctgcgcgcgcatcac
aaggatgccggactgccgcagaccttccagatcctggatacgcaagaccagctctcggcc
atcaagcgcctgttgaagcagatgaacgtggacgatgagaaatatccgccgcgcaacctg
atgtacttcatcaacagcgccaaggaccagggcttgcgcgccaaggacgtggatgcctac
gacgactacaaccgcaagttcgtcgaactctacgaactctacgatcagcaatgccagcgc
gaaggcgtggtcgatttcgccgagctgctgttgcgcacctatgaattgctctcgcgcaac
cagccgctgcgcgagcactaccagagtcgcttccgccacatcctggtcgatgagttccag
gacaccaacgacctgcaatacaagtggttgaagctcatggccggccagcacggcgcggtc
ttcgcggtgggtgacgatgaccagagcatctatgccttccgtggcgccaacgtgggcaac
atgcaggccttcgagcaggaattccatgtgcagaacctgatcaagctggagcagaactac
cgctcgcatggtcacatcctggacaccgccaacgagctcatcgccaacaacagcaagcgt
ctgggcaagaacctgcgcaccgatgccggccacggcgaacaggtgcgcgtctacgaagcc
accagcgacctgcaagaagcgcagtggattatcgaacaggtcaaggacttgatcgccgaa
ggctgggcgcgcagcgagatcgccatcctctaccgctccaatgcacagtcgcgggtgctg
gaacatgcgctcttcagctcggccattccctatcgcgtctatggcggccagcgcttcttc
gagcgagccgaaatcaagcacgccatcgcctatctgcagttgatggacaacctgcacaat
gattcggccttcctgcgcgtggtcaacttccccacccgcggcatcggcgccaaggccatg
gagtcattgcaggacgcggcgcgccagtacggctgctcgctctatgccgccgtgccctac
gtggccggcaaggccggttcctcgctgaacgccttcatcaagttgatcgaaggcgcgcgc
ttcgaaacccagcacctgcccctgccggaaacggtcaaggtggtgctggacctgtctggc
ctgatcacgcattaccgcaacgaaaaggaaggcgccgaccgcatcgagaacctggagcaa
ttggtcagtgccgccaccctgttcgtctcggaagaaggctatggcctggatgccccggcc
ttcctcggcccacaggcccaggccgcggccggcacggccatcaccaccgccgatggcgtg
gaggtgctggatgccgacgccccgctggtgaccatcatgtcgccgctgtcggccttcctc
tcgcacgcttcgctggaagccggcgacaaccaggcgcaagccggccaggatgccttgcag
ttgatgacggtacattcggccaagggcctggagttcgatgcggtcttcatcactggcatg
gaagagggcttgttcccgcacgagaacagcgccaaggaagagggcggcgtggaagaagag
cggcgcctgatgtacgtggccatcacgcgcgcccgcaagcgcctgttcatgaccttctcg
cagacccgcatgttgcacggccagacccgctacaacatgcgttcacgcttctttgatgag
ctgcccgaacaatccatcaagtggctctcgcccaagatcgcccagcatcactggttcgcc
aatcccaagccggcctgggatgaagtgccggaggcgggcaacaacaagattgcccagagc
ttctcgcgccagaccgattccggctggcgcatcggccagaacgtgtcgcacgccaagttc
ggcgagggcgtcatcgtcaatatcgaaggcggtggcggtgcggcacgcgcgcagatcaac
ttcggcaagttcggtatgaagttgctggatctgtcggtggccaagctggagaaaatctaa
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