Herbaspirillum rubrisubalbicans: Hrubri_0729
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Entry
Hrubri_0729 CDS
T04238
Name
(GenBank) inactivated superfamily I helicase
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hrb
Herbaspirillum rubrisubalbicans
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_0729
Enzymes [BR:
hrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hrubri_0729
DNA repair and recombination proteins [BR:
hrb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Hrubri_0729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ALU87948
LinkDB
All DBs
Position
825673..828432
Genome browser
AA seq
919 aa
AA seq
DB search
MQLATVPIPPTPDFWQQAVRVLLREGQPLGQALQGQGEAALDFSGVQLMVPAFSHAQNFK
AALARQLRRPYIAPRINTLSGLLAMQAPGETAPPSESERLMQLYAQLREHGWLKKMFSAR
RNADLLPLAHTLLALSDELTLALLPEIRASASGQEAAVGRWAQALAQLLEPLAPSAHGML
SDEAALVWQVWKTQLDANDRIVQRFDAMLALAEQASLPLVWVSPTEPEPLEAAFLAAYAQ
RQPVRIVTLDWSRPAIAPLHPIYLSAWEELARDDEGIAAADADNVRTVTTDVTLPLLCPA
DDLEIAAVQSAQIVLRWLGEGKNDIAIVAQDRVTARRLRALLERAEVAVADETGWKLSTT
RAAAALAAWNDLVSARGETNALLDLLKSPFVFPDDHARSERVMRIETRLRRTNIAGDWQA
LQSAFAEAGQADELACIIMLAKQAARFTGRKTLAQWCETQRGLCRALGMEAALRADGAGE
QCLLMLDDIAAEQGGLSDTFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNGARLRRF
DAVLVIGADAAHLPSPPQETLFFSNAVRRELNLTTRAVRQRQQLRDLTELLCVNPEVVLC
WQTHQDGEPNPVSPWIERLELKLAQQGAAPLRRVVLPPPVKQLRAQPSSMPAPAAPDLLP
ASLSASGFGSFLACPYQFFAQRMLRVAVMDELSDTPEKRDYGSWLHEILYRYHAHLRDQD
TPLPARAPLLAQLSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWRFAFGE
QAQSQALRWEDGGIELYGRLDRVDHNDRGERALLDYKTRTAANLRQKVKEEDDHQLAFYG
LLAGGDVQHAHYVALELGPDKKTGDAAAPDFARKQKMLQQQITTTMQAVAHGAALPANGI
ESVCQYCEMRGLCRKGAWL
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgccaccgtaccgatcccgcccacccccgatttctggcagcaagccgtgcgg
gtcctgttgcgcgaaggccaaccgctgggccaggccttgcaggggcagggtgaggctgcg
ctggatttctcgggagtgcaattgatggtgccggcgttttcccacgcgcagaacttcaag
gccgcactggcgcgccagttgcgccgcccctacatcgcgccgcgcatcaatacgctctcg
ggcctgttggccatgcaggcacccggcgagactgccccgccctcggagagcgaacggctc
atgcagctctacgcgcaactgcgcgaacatggctggttgaagaaaatgttttccgcacgt
cgcaatgccgacctgctgccgctggcgcataccctgctggccctgtcagatgagttgacg
ctggcgctgctgcccgagatccgcgccagcgcaagcgggcaagaggctgccgtgggtcgc
tgggcacaggcactggcgcaattgctggaaccgttggcaccttcggcgcacggcatgttg
tccgacgaagcggccttggtatggcaggtctggaagacccagttggatgccaacgaccgc
atcgtgcaacgtttcgacgccatgctggccctggccgagcaggccagcctgccgctggtc
tgggtcagccccaccgagccggagccgctggaggccgccttcctggcggcctatgcccaa
cgccagccggtgcgcatcgtcacgctggactggagccgtcctgcgatcgcacccttgcac
cccatctatctgtcggcatgggaagaactggcacgcgacgatgagggcattgctgcggcg
gatgccgacaacgtccgcaccgtcaccaccgacgtcacgctgcccttgctgtgcccggcc
gatgacctggaaatcgccgccgtacagagcgcgcagatcgtgctgcgctggctgggcgaa
ggcaagaacgacatcgccatcgtggcccaggaccgcgtcaccgcccgtcgcctgcgcgca
ttgctggagcgcgccgaagtggccgtggccgatgagactggttggaaactctccaccacc
cgcgccgccgccgcgctggccgcctggaacgacctggtctcggcccgtggtgaaaccaat
gcgctgctggatctgctgaagtcgcccttcgtctttcccgatgaccatgcgcgcagcgaa
cgtgtcatgcgcatcgaaacccgtctgcgccgcaccaacatcgccggcgactggcaagcc
ctgcaatcggcatttgccgaggccgggcaggccgatgagctggcctgcatcatcatgctg
gccaagcaggcggcgcgctttaccggccgcaagactctggcgcaatggtgtgaaacgcag
cgcggcctgtgccgcgcactgggcatggaagccgcgctgcgtgccgatggcgcgggtgag
caatgcctgctgatgttggatgacatcgccgccgaacaggggggattgtcggacaccttt
tccttcgccgagtggcgcgcattgctgaacctgcgtcttgatgccacttcctacatgccg
cccatcaaggataggcgagtggtaatgctacctctgaacggcgcgcgcctgcgtcgtttc
gacgcggtgctggtgatcggcgccgatgcggcgcacctgccctcgccgccgcaggaaacg
ctgttcttctccaatgccgtgcggcgcgagctgaacctgaccacgcgcgcggtacgtcag
cgccagcaattgcgcgacctgaccgaattgctgtgcgtgaacccggaagtggtgctgtgc
tggcagacccaccaggatggcgaacccaatccggtcagcccctggatagagcgcctggaa
ctgaagctggcgcagcagggggcagcaccgctgcgccgcgtggtcctgccgccaccggtc
aagcaactgcgggcgcagccctcgtccatgcctgcgcctgccgctcctgatttgttgccg
gcgtcgctgtcggccagcggcttcggcagttttctggcttgcccctatcaattctttgcc
cagcgcatgttgcgtgtggcggtcatggatgaattgtcggacacgcccgagaagcgcgac
tacggcagttggctgcatgaaatcctgtaccgctatcacgcgcacctgcgcgatcaggac
acccccttgccggcgcgcgcgccgctattggcgcaactctcggaagaagtcttccagcgc
gagatgcagcgtcatcccgccgcgctggcctttcatgcgcgctggcagaaggtgatgccg
gcctacctgctgtgggccaacgaacgcgaggccgagggctggcgtttcgccttcggtgaa
caggcgcagtcgcaggccttgcgctgggaagatggtggcatcgagctctacggccgactg
gatcgggtcgatcacaacgaccgtggcgagcgcgccctgctcgactacaagacccgcact
gccgccaacctcaggcaaaaggtcaaggaagaagacgaccatcaactggccttctatggc
ctcttggccggcggcgatgtgcaacacgcccattacgttgccctcgaactgggccccgac
aagaagaccggcgacgccgccgcacccgatttcgcacgcaaacagaagatgctccagcaa
cagatcaccaccaccatgcaagccgtggcccacggcgcggcgctgccggccaacggcatc
gaatcggtctgtcagtattgcgagatgcgcggcctgtgccgcaagggagcctggctgtga
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