Herbaspirillum rubrisubalbicans: Hrubri_1115
Help
Entry
Hrubri_1115 CDS
T04238
Name
(GenBank) ATP-dependent Rad3-related DNA helicase c2 protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hrubri_1115
09124 Replication and repair
03420 Nucleotide excision repair
Hrubri_1115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrb03021
]
Hrubri_1115
03036 Chromosome and associated proteins [BR:
hrb03036
]
Hrubri_1115
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_1115
Enzymes [BR:
hrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Hrubri_1115
Transcription machinery [BR:
hrb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Hrubri_1115
Chromosome and associated proteins [BR:
hrb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Hrubri_1115
DNA repair and recombination proteins [BR:
hrb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Hrubri_1115
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ALU88327
LinkDB
All DBs
Position
1299782..1302097
Genome browser
AA seq
771 aa
AA seq
DB search
MNAATDAGQISAPRYTVSVRALCEFTAKQGDLDLRFTPTPTAQEGIAGHAIVAARRGQGY
QSEVVLAADHGPLHVRGRADGYEPGQHRLEEVKTYRGQLSSLPDNHRHLHWAQLRVYGHL
MCLKLGLPSIHLALVYFDIGSQQETVLEEERSSEELASLFAGQCERFVHWAEQELAHRAA
RDAALQALRFPYGDFRPGQRQLAEAVFRAHRGRRSLLAQAPTGIGKTLGTLFPALKAAPG
ERLDKILFLAAKTPGRQLALDAAASLKGNGQLPLRVLELCARDKACEYPDRLCRGDACPL
AQGFYDRLPAARAACLTQPLLDRQHLREVALQHQVCPYYLGSEMTRWSDVIVGDYNYWFD
GGAMLYGMALAHDWRVSVLADEAHNLVARARSMYSAQLSRASLRAARAVAPPSIAKPLEK
LGRAWTAAGKKADLPYQVLEAPPPKFVDALSSSVGAISDYLAQVAVPLEAPLRDFYFDAM
AFVRLAESFGPHSLLDLTREDERNTVLCIRNVVPAPFLGPRFALAHATTLFSATLAPWHY
FADLLGMPASTAWIDVDSPFHASQLQVRLAHDISTTWQRRAASIAPICALMARQFNERPG
NYLAFFSSFEYLQQAHDALLRTHPEIPVWQQSRRMSEDDRDAFLARFEAGGQGIGFAVLG
GSFGEGVDLPGRRLIGAFVATLGLPQFNPVNEQLRQRMEALFGCGYDYTYLYPGMQKVVQ
AAGRVIRTESDQGTVWLIDQRFSRPEVRALLPAWWVLPGHGADQADKSNEA
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagccactgatgccggccagatcagcgccccacgctacaccgtctcggtgcgc
gccctgtgcgaattcacggccaagcagggtgacctggacctgcgtttcacgcccacgccc
accgcccaggaaggcatcgccggtcacgccatcgtggccgcgcggcgcgggcaggggtat
cagtccgaagtcgtgctggccgccgaccatggcccgctgcacgtgcgcgggcgcgccgat
ggctacgagcccggccagcatcggctggaagaagtgaagacctatcgtggccagctctcc
agcctgcccgacaatcatcgccacctgcactgggcacaattgcgcgtctatggtcacctg
atgtgcctgaagctagggttgcccagcatccacctggcgctggtctatttcgatatcggc
agccagcaggaaacggtgctggaggaagagcgcagcagtgaggaacttgcttcacttttt
gccgggcaatgtgaacgtttcgtacactgggccgagcaggaactggcgcatcgcgccgca
cgcgatgcagccttgcaggcgctgcgctttccctatggcgatttccgtcccggacagcgg
caactggcagaggcggtatttcgcgcccatcgcggtcggcgcagcctgctggcgcaagcg
ccgacgggcatcggcaagacgctggggacgctctttccggcattgaaggcggcgcccggg
gagcgactggacaagatcctgttcctcgccgccaagaccccgggccggcaactggcgctg
gacgcggcggccagtctcaagggcaacggtcagctgccgctgcgcgtgctggaactgtgc
gcccgcgacaaggcctgcgaatacccggaccgcttgtgccggggcgatgcctgcccgctg
gcccagggcttctatgatcgtttgccggcagcgcgcgccgcttgcctgacgcagcccttg
ctggatcgccagcacctgcgcgaggtggccttgcagcaccaggtctgcccttactacctg
ggcagcgaaatgacgcgctggagcgatgtcattgtcggcgactacaactactggttcgat
gggggggccatgctctatggcatggccttggcgcatgactggcgcgtgagcgtgctggcc
gatgaagcccacaacctggtagcgcgcgcccgcagcatgtacagcgcgcaattgagccgc
gccagcctgcgcgccgcgcgtgcggtagccccaccatccatcgccaagccgctggaaaaa
ctgggccgcgcctggaccgccgccggcaagaaagctgacttgccttaccaggtgctggaa
gcgccgccgcccaagttcgtcgatgcgttaagcagcagcgtgggggccatcagtgattac
ctggcccaggtggcggtgccgctggaagcgccgctgcgcgatttctatttcgatgccatg
gccttcgtgcgcctggccgagagttttggtccgcactccctgttggacctcacgcgcgaa
gatgaacgcaataccgtgctgtgcatccgcaacgtggtaccggcaccgttcctggggccg
cgctttgcgcttgctcatgccaccacgctgttctcggccacgctggcgccctggcattat
tttgccgacctgctggggatgccggcctcgaccgcctggatcgacgtcgattcccctttc
cacgccagccagttgcaggtgcgcctggcgcatgacatctccaccacctggcaacgtcgc
gccgcctcgattgcgccgatctgcgcgctgatggcgcgccagttcaatgaacggccgggc
aattacctggcgttcttttccagcttcgagtatctgcaacaggcgcacgatgccttgctc
cgtactcaccccgagatccctgtctggcaacagtcgcgccgcatgtcggaggatgaccgc
gatgctttcctggcgcgcttcgaagcgggcgggcagggcatcggctttgcagtgctgggc
ggctccttcggggaaggggtggacctgccgggtcggcgtttgatcggcgccttcgtcgcc
acgctgggactgccgcaattcaatccggtcaacgagcaactgcgccaacgtatggaggcg
ctctttggctgtggctatgactacacctatctctatcccggaatgcagaaagtggtgcag
gcggccgggcgcgtgatccgcaccgaatccgaccagggcacggtctggctgatcgatcag
cgcttcagccgtcccgaggtacgcgccttgttgccggcatggtgggtattgccgggccat
ggggcagaccaggccgataagtccaatgaggcatga
DBGET
integrated database retrieval system
