Herbaspirillum rubrisubalbicans: Hrubri_1280
Help
Entry
Hrubri_1280 CDS
T04238
Symbol
lpdA
Name
(GenBank) 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase protein
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb00010
Glycolysis / Gluconeogenesis
hrb00020
Citrate cycle (TCA cycle)
hrb00260
Glycine, serine and threonine metabolism
hrb00280
Valine, leucine and isoleucine degradation
hrb00310
Lysine degradation
hrb00380
Tryptophan metabolism
hrb00620
Pyruvate metabolism
hrb00630
Glyoxylate and dicarboxylate metabolism
hrb00640
Propanoate metabolism
hrb00670
One carbon pool by folate
hrb00785
Lipoic acid metabolism
hrb01100
Metabolic pathways
hrb01110
Biosynthesis of secondary metabolites
hrb01120
Microbial metabolism in diverse environments
hrb01200
Carbon metabolism
hrb01210
2-Oxocarboxylic acid metabolism
hrb01240
Biosynthesis of cofactors
Module
hrb_M00009
Citrate cycle (TCA cycle, Krebs cycle)
hrb_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
hrb_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
Hrubri_1280 (lpdA)
00020 Citrate cycle (TCA cycle)
Hrubri_1280 (lpdA)
00620 Pyruvate metabolism
Hrubri_1280 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
Hrubri_1280 (lpdA)
00640 Propanoate metabolism
Hrubri_1280 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Hrubri_1280 (lpdA)
00280 Valine, leucine and isoleucine degradation
Hrubri_1280 (lpdA)
00310 Lysine degradation
Hrubri_1280 (lpdA)
00380 Tryptophan metabolism
Hrubri_1280 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
Hrubri_1280 (lpdA)
00670 One carbon pool by folate
Hrubri_1280 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrb04147
]
Hrubri_1280 (lpdA)
Enzymes [BR:
hrb01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
Hrubri_1280 (lpdA)
Exosome [BR:
hrb04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
Hrubri_1280 (lpdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Biotin_lipoyl
Pyr_redox
Pyr_redox_3
FAD_oxidored
GIDA
FAD_binding_2
AlaDh_PNT_C
Biotin_lipoyl_2
NAD_binding_8
Thi4
FAD_binding_3
HI0933_like
GCV_H
DAO
DEC-1_N
Motif
Other DBs
NCBI-ProteinID:
ALU88492
LinkDB
All DBs
Position
1512599..1514374
Genome browser
AA seq
591 aa
AA seq
DB search
MSLSEVKVPDIGDFKEVEVIEVMVKVGDTIKVDQSLITVESDKASMEIPSSQAGVVKEVK
VKVGDKVAEGSLLLLVEAAGEAAAAPAPAAAPAPAAAAPAPAAAPAAAPTAASFGGSADV
QCDVMVLGGGPGGYSAAFRAADLGLNTVIVERESTLGGVCLNVGCIPSKALLHVAAVIDE
TAAMASHGVTFGKPEIDIDKLRAYKDKVIGTMTGGLAGMAKARKVQVVNGDGQFAGPNHI
EVTAADGSKKVVQFKHAIIAAGSSVVNLPFVPQDPRIVDSTGALELRQVPKRMLVIGGGI
IGLEMATVYSTLGARIDVVEMMDGLMQGADRDMVKVWQKFNEKRFDNVMVKTKTVAVEAL
PEGIKVTFEAAEAGATAPEPQLYDLVLVAVGRSPNGKKLSADKAGVIVSDRGFIAVDKQM
RTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAIAGEKSFFDASVIPSVAYTDPEVAWVG
VTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGFTKLLFDAETHRIIGGGIVGTHAGDM
IGEVALAIEMGADAVDIGKTIHPHPTLGESLGMAAEVAEGHCTDLPPQRKK
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagtctctctgaagtcaaagtccccgatatcggggatttcaaggaagtcgaagtcatc
gaggtgatggtcaaggtcggcgacaccatcaaggtggatcaatcgctgatcaccgtcgaa
tccgacaaggccagcatggaaatcccgtccagccaggccggcgtggtcaaggaagtcaag
gtcaaggtcggtgacaaggtcgccgaaggttcgctgctgttgctggtcgaagctgccggt
gaagccgcagccgccccggcacctgctgcagcacccgcaccggctgctgccgcgcctgct
cccgccgctgctcccgctgccgcgccgaccgctgccagcttcggcggcagcgccgacgtg
cagtgcgacgtgatggtcctcggtggtggccctggcggctactcggcggccttccgcgct
gccgacctgggcctgaacaccgtcatcgtcgaacgtgaatccacgctcggcggcgtctgc
ctcaacgtcggttgcatcccctccaaggccctgctgcacgtggccgccgtgatcgacgag
actgctgcgatggcctcgcacggtgtgaccttcggcaagcccgagatcgacatcgacaag
ctgcgcgcctacaaggacaaggtgatcggcaccatgaccggcggcctggccggcatggcc
aaggcgcgcaaggtacaggtggtcaatggcgacggccagttcgccggccccaaccacatc
gaagtcaccgctgcggacggcagcaagaaggtggtgcagttcaagcacgccatcatcgcc
gccggttcctcggtggtgaacctgcccttcgtgccgcaggatccgcgcatcgtcgattcg
accggtgcactcgaactgcgccaggtacccaagcgtatgctggtcatcggcggcggcatc
atcggcctggaaatggctaccgtctattccaccttgggcgcacgcatcgacgtggtcgag
atgatggatggcctgatgcagggcgctgatcgtgacatggtcaaggtttggcagaagttc
aacgagaagcgcttcgacaacgtcatggtcaagaccaagaccgttgccgtggaagccctg
cccgaaggcatcaaggtgacttttgaagccgctgaagccggtgccaccgcacccgagccg
caactgtacgacctggtgttggtggccgtgggccgcagcccgaacggcaagaagctgtcg
gccgacaaggctggcgtgatcgtctcggatcgcggtttcatcgctgtcgacaagcagatg
cgcaccaacgtcccgcacatcttcgccatcggcgacctggtgggccagcccatgctggcg
cacaaggcggtgcatgaaggccacgtggccgccgaagcgattgccggcgagaagagtttc
ttcgacgccagcgtcattccttcggtggcgtataccgatccggaagtggcatgggtcggc
gtgaccgaagacgaagccaaggcaaagggcatcaagatcgagaagggccacttcccgtgg
gccgcttccggtcgtgccgtggccaatggccgttcggaaggcttcaccaagctgctgttt
gatgccgagacccatcgcatcatcggtggcggcatcgtcggcacccacgccggcgacatg
atcggcgaagtggccttggccatcgagatgggcgccgatgcggtcgatatcggcaagacc
atccacccgcacccgaccctgggcgagtccctgggcatggcggcggaagtggccgaaggg
cattgcaccgatttgccgccgcagcgcaagaagtaa
DBGET
integrated database retrieval system
