Herbaspirillum rubrisubalbicans: Hrubri_1589
Help
Entry
Hrubri_1589 CDS
T04238
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hrubri_1589 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrb03019
]
Hrubri_1589 (rhlE)
Enzymes [BR:
hrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Hrubri_1589 (rhlE)
Messenger RNA biogenesis [BR:
hrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hrubri_1589 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
ALU88797
LinkDB
All DBs
Position
complement(1857492..1859042)
Genome browser
AA seq
516 aa
AA seq
DB search
MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL
QRLSTMPRQKINGHLPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI
TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP
KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHL
IKTHQWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGKLTAL
IATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERDLLHD
IERFIKREIPVEVIAGFEPDPSAKPQPIQLRSGQGRHQNGGGRGGQRSAPRKPAANGNGN
SAAAKPAKPASGGNGGNGGQAAKPRPAANGNAARGQGARAGNAGGNGSTGGNVGNNANRA
PKPAHANNQPRNPGQPRQGGPRPSALTHGGQRAAGK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttccgcgctcggcttgtccgacgaaatcgttcgtgccgtttccgaacaaggc
tatacctcccctaccccgatccaggcccaggctgttcccgcagtgctctccggcggtgac
ctgctggccggcgcccagaccggcaccggcaagactgccggcttcaccctgccgctgctg
caacgcctgtcgaccatgccgcgccagaagatcaatggccatctgccgatccgcgcgctg
atcctggcccctacccgcgaactggccgcccaggtcgaagagagcgtgcgtcagtacggc
aagtacctaccgctgacctcggcctgcatcttcggcggtgtcggcatcaatccgcagatc
acgctcttgaagcgtggcgtcgatatcctggtggccacccctggccgcttgctggaccac
atgcagcaaggcaccgtgaacctgcagcacatccagatcctggtgctggacgaagccgac
cggatgctggacatgggcttcatccgcgacatccgcaaagtgctggccgcactgccgccc
aagcgccagaacctgctgttctcggccaccttcgccgatgaaatcaagaagctggccgac
agcctcctgaacaacccggccctgatcgaagtggcacgccgcaactccaccgtggaagtg
atcgctcagaagatccacccggtcgaccgcgacaagaagcaccccatgctggcgcacctg
atcaagacccaccagtggaagcaggtgctggtcttcacccgcaccaagcacggcgccaac
aagctggtcgaacaactggcacgcgacggcatcaccgccatggcgatccacggcaacaag
agccagtcggcccgcaccaaggcactggccgaattcaaggacggcaagctgaccgccctg
atcgccaccgatattgctgcccgcggcatcgacatcgaccaactgccgcacgtggtcaac
tatgacctgcccaacgtacccgaagattacgtgcaccgcatcggccgcaccggccgtgcc
ggcgctaccggcgaagccgtctcgctggtgtgcgtggatgagcgcgacctgttgcacgac
atcgaacgcttcatcaagcgcgagattccggtggaagtgatcgccggtttcgaacccgac
cccagcgccaagccgcagccgatccagctgcgcagcggccagggccgtcaccagaacggg
ggtggacgtggcggtcagcgcagcgccccgcgcaaacccgctgccaatggcaacggcaat
tctgctgcagccaagccggccaaaccagccagcggtggcaatggtggtaatggcggccaa
gctgccaaaccgcgcccagccgccaatggcaatgccgcgcgtggccagggcgcacgcgct
ggcaacgcaggtggcaatggcagcactggcggcaacgttggcaacaacgccaaccgcgcc
cccaagccggcccatgccaacaaccagccgcgcaacccgggccagccccgccagggcggt
ccgcgcccttcggcgctgacccacggcggccagcgcgcagcgggcaagtaa
DBGET
integrated database retrieval system
