Herbaspirillum rubrisubalbicans: Hrubri_1743
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Entry
Hrubri_1743 CDS
T04238
Symbol
vacB
Name
(GenBank) exoribonuclease RNAse R protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hrubri_1743 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrb03019
]
Hrubri_1743 (vacB)
03016 Transfer RNA biogenesis [BR:
hrb03016
]
Hrubri_1743 (vacB)
Enzymes [BR:
hrb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Hrubri_1743 (vacB)
Messenger RNA biogenesis [BR:
hrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Hrubri_1743 (vacB)
Transfer RNA biogenesis [BR:
hrb03016
]
Prokaryotic type
tRNA degradation factors
Hrubri_1743 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rrp44_S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ALU88947
LinkDB
All DBs
Position
2026536..2029025
Genome browser
AA seq
829 aa
AA seq
DB search
MSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD
RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGTDDLFLPEKEMQKVMHGDRVQARIVGT
DRRGRPEGTIVEVVERANTHVIGRLLNENGVWVVAPEDKRIGHDVLLAGPPGKAKAGQVV
SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLSAKLPSEV
KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRAKGYRLIVAIADVSHYVKPN
DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ
FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQARGAID
FETTETYIVCNAAGKIEKILPRTRNDAHRLIEECMLAANVCAADLLKRHDHPALYRIHAG
PTKEKLTQLRTFLKQVGLHLGGGDTPSASDYAELMPKVKARPDAVLIQTMLLRSMQQAVY
SPDNIGHFGLSYESYAHFTSPIRRYPDLLTHRAIKAVLQGKRYEPKGIDSGALNTSISPA
ARKAQALQRATDKAAGKKPRGESALAIWEALGLHCSANERRADEASRDVEAWLKCYFIRD
KLGEEFTGTISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTGIRYQ
LTDRVTVQVSRVDLDARKIDLSLVNEPGIRTLIKNEAKRAETAARGKSAGSKPAARGKKA
AASKPATAAAKPKGGAKAKAGSTTHARTGEADRKRAAAKGFNKGGKKKR
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaatttccctattccattcccagccgggaagagatcctcggcatcctgcgcact
tcgtccggcgcgcaaaatgctgctgcactggcagccgcgctaggcgtcaagcctgaagaa
atggatggcctgacgcgccgcctcaacgccatggagcgcgacggccagatcaagccggac
cgtgccggccactacaagctgacccattcgcccgatttcatcctgggccgggtgtcgagc
catcgcgatggtttcggtttcctgctgcccgacgatggtaccgatgacctgttcctgcca
gagaaggaaatgcagaaggtcatgcatggcgaccgcgtccaggcgcgtatcgtcggtacc
gaccgccgcggccgccccgaaggcaccatcgtcgaagtggtggagcgcgccaatacccac
gtgatcggccgcctgttgaatgaaaacggcgtctgggtggtcgcgcccgaagacaaacgc
atcggccacgatgtgctgctggcgggcccgccgggcaaggccaaggcagggcaggtggtc
agcgtggagctgaccgagcatccctcccgctatacgcaaccggtgggcaagatcgtcgag
atcctcggcgacatcgatgaccccggcatggaaatcgaaatcgccgtgcgcaagtatggc
gtgccacacgagttctcggatgccgccaagaagctctcggccaagctgcccagcgaagtc
aaggcggctgacctgaaggaccgtgtggacctgcgcgatgtgccgctggtcaccattgat
ggcgaagacgcgcgcgacttcgatgatgcggtctactgcgaaccggtcaagatcggccgc
gccaagggttatcgcctgatcgtggccatcgccgatgtgagccactacgtcaagcccaac
gatgcgctggatgtggatgcgctggagcgtagtacctccgtctacttcccgcgccgggtc
atcccgatgctgccggaaaagctctccaacggtctgtgctcgctgaacccggacgtggat
cgcctgaccctggtgtgcgatgccgtcatcaccgccaagggcgagatcaaggcctaccag
ttctatccggccgtgatccactcggcagcgcgtctgacctataccgaagtggcctccatt
ctggccaataccaagggcccggaagcggcgcgtcgcatcggcctggtgccgcacttgacg
cacctctacgaagtgttccaggcgctcttgacggcccgccaggcgcgcggtgccatcgac
ttcgagaccaccgagacctacatcgtctgcaacgccgccggcaagatcgagaagatcctg
ccgcgcacccgcaacgatgcgcaccgcctgatcgaggaatgcatgttggccgccaacgtg
tgcgcggccgacctgttgaagcgtcacgatcatccggcgctctatcgcattcacgccggc
ccgaccaaggaaaagctgacgcagttgcgtaccttcctgaagcaggtcggcctgcacctg
gggggcggcgacacccccagtgcctccgactatgccgagctgatgcccaaggtcaaggcg
cgcccggatgcggtgctgatccagaccatgctgttgcgctccatgcagcaggccgtctac
agccctgacaacatcggccacttcggcctgtcctacgaatcctacgcgcacttcaccagt
ccgatccgccgttatcccgacctgctgacccaccgtgccatcaaggccgtgctgcagggc
aagcgctacgagcccaagggtatcgacagcggcgcgctcaatacctcgatttcgccggct
gcgcgcaaggcgcaggcgctgcagcgggccaccgacaaggccgccggcaagaagccgcgt
ggcgaaagcgcgctggccatctgggaagcactgggtctgcactgttcggccaacgagcgc
cgtgccgatgaggcttcgcgcgatgtggaagcctggctgaagtgctacttcatccgcgac
aagctgggcgaggaattcaccggcaccatttccggcgtggccaccttcggtatcttcgtg
cagctcgatgcgctctacatcgaaggtctggtgcacgtcactgaactgggtgccgactac
ttccagtacgatgaagcgcgccatgagctgcgcggcgagcgcactggcatccgttaccag
ttgaccgaccgcgtcaccgtgcaggtcagtcgggtggatctggatgcgcgcaagatcgac
ttgtcgctggtcaacgagccgggcatccgcaccttgatcaagaacgaagccaagcgtgcc
gagactgctgcgcgcggcaagtcagccggcagcaagccggccgcacgcggcaagaaggcc
gcggcatccaagccggccacggcagcggccaagcccaagggcggcgccaaggccaaggcc
ggcagcaccactcatgcgcgcaccggcgaggccgaccgcaagcgtgctgccgccaagggt
ttcaacaagggtggcaagaagaagcgatga
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