Herbaspirillum rubrisubalbicans: Hrubri_1780
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Entry
Hrubri_1780 CDS
T04238
Name
(GenBank) sigma-54 dependent transcription activator protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
hrb
Herbaspirillum rubrisubalbicans
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hrb03000
]
Hrubri_1780
Transcription factors [BR:
hrb03000
]
Prokaryotic type
Helix-turn-helix
Other families
Hrubri_1780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
PAS_4
HTH_30
Mg_chelatase
IclR_C
TetR_N
AAA
HTH_23
AAA_2
HTH_Tnp_ISL3
AAA_3
HTH_29
RsmI_C
HTH_7
HTH_22
Phage-MuB_C
HTH_17
IstB_IS21
HTH_psq
HTH_28
P22_Cro
NB-ARC
Parvo_NS1
HTH_50
NUMOD1
Motif
Other DBs
NCBI-ProteinID:
ALU88984
LinkDB
All DBs
Position
complement(2069276..2071318)
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AA seq
680 aa
AA seq
DB search
MQYQANRPGAGALLGAAPLVQAATDGVLDLQAIERSHQRSSSYGITRGQQPDLPVLSRAD
LAQALEANQTLSGHARPVMETLYDQIRNTHSMVILSDAEGTIIHTLGDSDFLAKADRVAL
GSGARWSEQLRGTNAIGTALYEQKPTTVHAQQHYLDANRFLTCSAAPIFDHRGQVLGVLD
VSGECGSFHKHTMALVRMSAQMIENHLLAGSFPDGITLHFHSRAEFVGTLVEGIVSFTPG
GRFLAANRSAQFQLGLTLSALQSHTFASLFGVPLSLLFEHHRKATPGLLELCLHNGIRIH
GRAELRLRNQHFQNAREAAIDTPELMHPMPSAPATPSAPLAPQRRVHPGQVRPDLQALDT
GDARMSAIIGKLRKVIDRDIAVLITGETGTGKEWLAQAIHRESARFRATQTRGGAAPFVA
VNCSAIPENLIEAELFGYEDGAFTGARRKGAIGKIAQAQGGTLFLDEIGDMPLALQGRLL
RVLQERTVTPLGSQRVIPVEFALVCATNQPLREMAARHSFREDLYYRINGLQVKLPALRE
RSDLAQLIERILIAEGGALAPRFDEQAQALLQASRWPGNLRQLSNLIRTALAMAEGEAWI
GVQHLPDDFLEEAGPLQAGCGMAATTVCEEMRSDCLSIHDNEWATIERALRTHAGNVSAA
AKALGVSRNTLYRRFKSRGH
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcaataccaggcaaaccggcccggcgccggtgcattgctgggcgcggcgcccctggtg
caggccgccactgatggcgtgctggacctgcaggccatcgagcgttcgcaccagcgcagt
tcgtcctacggcatcacccgcggccagcagcccgacctgcccgtgctctcgcgcgccgac
ctggcgcaggcgctggaggccaaccagaccctctccggccacgcccgcccggtcatggaa
accctctacgaccagatccgcaacacccacagcatggtgatcctctcggatgccgaaggc
accatcatccatacgctgggcgacagcgatttcctggccaaggccgatcgcgtggcgctg
ggttcaggggcgcgctggtcggagcaattgcgcggcaccaatgccatcggcaccgcgctg
tatgaacaaaaacccactaccgtacacgcccagcagcattacctggatgccaaccgcttc
ctgacctgctcggccgcgcccatcttcgaccatcgcggccaggtgctgggggtgctggat
gtgtcgggcgaatgcggcagcttccacaagcacaccatggcgctggtgcgcatgtcggcg
cagatgatcgaaaaccacctgctggccggcagcttccccgatggcatcaccctgcacttc
cacagccgcgccgaattcgtcggtacgctggtcgaaggcatcgtcagcttcacccctggg
gggcgcttcctggccgccaatcgcagcgcgcagttccagctcgggctgacgctgtcggcc
ttgcaatcgcataccttcgcttcgctgttcggggtgccgctgtcgctgctgttcgaacac
caccgcaaggccacaccaggcttgctggaactgtgcctgcacaacggcatccgcattcac
ggccgggccgaactgcgactgcgcaaccagcatttccagaatgcgcgcgaagcggcaatc
gacacgcccgagctgatgcaccccatgccgagcgcgccggccactcccagcgctccgctg
gcgccgcagcgccgtgtgcatccgggccaggtgcggcccgacctgcaggcgctcgatacg
ggcgacgcccgcatgagcgccatcatcggcaagttgcgcaaggtcatcgaccgcgatatt
gccgtgctgatcacgggcgaaaccggcaccggcaaggaatggctggcccaggccatccac
cgcgagagtgcgcgttttcgtgccacccagacccggggcggcgcagcgcccttcgtggcg
gttaattgctcggccattcccgaaaacctgatcgaagccgaactgttcggttatgaagat
ggcgccttcaccggcgcgcgccgcaagggcgccatcggcaagatcgcgcaagcccagggc
ggcaccctgttccttgatgaaatcggcgacatgccgctggcgctgcaaggacggctgctg
cgcgtgctgcaggaacgcacggtgacgcccctgggcagccagcgcgtgatcccggtggag
ttcgcgctggtgtgcgccaccaaccagccgctgcgcgagatggcagcgcgccacagtttc
cgcgaagacctctactaccgcatcaacggcttgcaggtgaagctgccggccttgcgcgaa
cgcagcgacctggcgcaattgatcgagcgcatcctcatcgctgaaggcggcgcgctggcg
ccgcgcttcgatgaacaagcccaggcgctgctgcaggccagccgctggccaggcaacctg
cggcaactgtccaacctgatccgcaccgccctggccatggccgagggcgaggcctggatc
ggcgtgcagcacctgccagatgactttttggaagaggcagggccgctgcaggcgggttgc
gggatggctgctactaccgtatgtgaagaaatgcgcagtgattgcctctccatccacgac
aacgaatgggccaccatcgaacgcgccctgcgcacccatgccggcaacgtcagcgccgcg
gccaaggccttgggggtatcgcgcaatacgctctaccgacgcttcaagtcacgcgggcac
tga
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