Herbaspirillum rubrisubalbicans: Hrubri_3178
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Entry
Hrubri_3178 CDS
T04238
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hrubri_3178 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_3178 (uvrB)
DNA repair and recombination proteins [BR:
hrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hrubri_3178 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Hrubri_3178 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
Microtub_bd
UvrD-helicase
HEM4
HH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
ALU90339
LinkDB
All DBs
Position
3708859..3710940
Genome browser
AA seq
693 aa
AA seq
DB search
MAELTPINPELDESKFVTFPDSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVT
GSGKTYTMANTIARLGRPAIVFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAY
VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTL
RAKDKVSQRDVIARLIQMQYTRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEI
DSLQLFDPLTGRVRQKIPRFTIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLI
EEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGGKPGDPPPTLVDYLPKDALMFLDESH
VLIGQLNGMYNGDRARKVNLVDYGFRLPSALDNRPLKFDEFEKKMRQTVFVSATPADYEN
THADQVVEQVVRPTGLVDPVIAVRPATTQVDDLMQEIHDRIAKNERVLVTTLTKRMAEQL
TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILD
ADKEGFLRSERSLIQTIGRAARNLNGMAILYGDVVTDSMHKAISETERRRAKQLAFNEAN
GIVPTGIKKEIRELIDGIFNPAQARTELMVAEEKKNYESMSEKQISKEIKRLEKQMQEHA
KNLEFEKAAAARDQLHLLKQQLFGAPGSDTAVA
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggctgaactgacccccatcaatcccgagctggacgagagcaagttcgtcaccttcccc
gactcgcccttcaagctctaccaggtcttcccaccggcgggcgaccagccggcggccatc
gacaagctggtcgaaggggtcaacgacggcctgttctaccagacgctgttaggggtgacc
ggctcgggcaagacctacaccatggccaataccattgcccgcctgggccgcccggccatc
gtgttcgcccccaacaagacgctggcggcgcagctctacagcgaattccgcgaattcttc
ccgcacaatgcagtggaatatttcgtcagctactacgactactaccaaccggaagcctac
gtgccccagcgcgacctgttcatcgagaaggattcctcgatcaacgagcacatcgaacag
atgcgcctgtcctgcaccaagtcgctgatggaacggcgcgacgtggtgatcgtggcgacc
gtctcggccatctacggtatcggtaaccccaacgaataccaccagatgatcctgaccctg
cgcgccaaggacaaggtctcgcagcgcgacgtcatcgcccgcctgatccagatgcagtac
acccgcaatgaagtggacttcggacgcggcaccttccgcgtgcgcggcgacaccatcgac
gtcttcccggccgaacacgccgaacttgccgtgcgcatcgagaccttcgacgatgagatc
gacagcctgcaactgttcgatccgctcaccggccgcgtgcgccagaagattccgcgcttc
accatctaccccggttcgcactacgtcacgccgcgctcaaccgtgttgcgcgccatcgag
accatcaaggaagaactggccgagcgcctggaattcttccgcaaggaaaacaagctcatc
gaagaacagcggctggaacagcgcacccgcttcgacatcgagatgatgaccgagatcggc
ttcaccaagggcatcgagaactactcgcgccacctctccggtggcaagccgggcgatccg
ccgccgacgctggtggattacctgcccaaagatgcgctgatgttcctggatgaatcgcac
gtgctgatcggtcagttgaacggcatgtacaacggcgatcgcgcgcgcaaggtgaacctg
gtggactacggtttccgcctgccctcggcgctggacaaccggcccctgaagttcgatgaa
ttcgaaaagaagatgcgccagaccgtctttgtctcggccaccccggccgactatgaaaac
acccacgccgaccaggtggtggaacaggtggtgcgcccgaccggcctggtcgatccggtc
atcgcggtgcgcccggccaccactcaggtggacgacctgatgcaggagatccacgaccgc
atcgccaagaacgagcgggtgctggtgaccacgttgaccaagcgcatggccgagcagttg
accgaattcctgtccgacaatggcatcaaggtgcgctacctgcacagcgacatcgatacc
gtggagcgcgtggaaatcatccgcgacctgcgcctgggtaccttcgacgtactggtgggc
atcaacctgctgcgcgaaggtctggacattcccgaagtctcgctggtggcgatcctggat
gcggacaaggaaggcttcctgcgttccgagcgcagtctgatccagaccatcggccgcgcc
gcccgtaacctcaacggcatggccattctctatggcgatgtggtgaccgattccatgcac
aaggccatcagcgaaaccgaacggcggcgcgccaagcaactggccttcaacgaagccaat
ggcatcgtgcccaccggcatcaagaaggaaatccgcgagctcatcgatggtatcttcaac
ccggcccaggcgcgcaccgagttgatggtggccgaggaaaagaagaactacgaatccatg
agcgaaaagcagatcagcaaggaaatcaagcgcctggaaaagcagatgcaggaacacgcc
aagaacctggagttcgaaaaggcggccgccgcgcgcgaccagttgcacctgctgaagcag
cagctcttcggcgcgcccggcagcgatacggccgtggcctga
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integrated database retrieval system
