Herbaspirillum rubrisubalbicans: Hrubri_3179
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Entry
Hrubri_3179 CDS
T04238
Name
(GenBank) uracil DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Hrubri_3179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_3179
Enzymes [BR:
hrb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Hrubri_3179
DNA repair and recombination proteins [BR:
hrb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Hrubri_3179
Prokaryotic type
Hrubri_3179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
ALU90340
LinkDB
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Position
3711023..3711826
Genome browser
AA seq
267 aa
AA seq
DB search
MPTATAFPALPACLLELIQTAHPSWHAALRAGLEAIQQADPAYLGTLAQDDYLPTEGRLF
AAFQQPLDQVRYVLVGEGPYPRAASATGVCFMDGAVGSLWSDKGLSKQVNRATSLRNFMK
MLLVADGRLQAGNTSGDALAGIAAQAQADVQGTIQTLADLQDNLTAQGFLLLNASLVFRA
HVAPLKDARAWKPFFETVLRALAEHGQAQRRPLPTLVLWGKIAEQLHSLPLVEQFPRAVA
EHPYNLSFIEHSGMQALFGAMQLLKKK
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgcctactgccactgccttccctgccctgcccgcctgcctgctggaactgatccagacc
gcccatccctcctggcacgccgccttgcgcgccggcctggaggcgatccagcaagccgat
ccggcctacctcggcacgctcgcccaggatgattacctgcccaccgagggtcgcctcttc
gccgccttccaacagccgctggaccaggtgcgctacgtgctggtcggcgaaggcccctac
ccgcgggcggccagtgccaccggtgtgtgtttcatggatggcgcagtgggttcgctgtgg
tcggacaagggcttgtccaagcaggtcaatcgcgccacctccctgcgcaatttcatgaag
atgctgctggtggccgatggccgcctgcaggctggcaataccagcggcgacgcgctggcc
ggcatcgccgcccaggcccaggcggacgtgcaaggcacgatccagaccttggccgacctg
caggacaatctcaccgcacagggtttcctgctgctcaatgccagcctggtgtttcgcgcc
cacgtggcgccgctcaaggatgcccgcgcctggaaacccttcttcgagaccgtgctgcgg
gcactggccgaacacggtcaggcgcagcgcaggccgctgcccaccctggtgttgtggggc
aagatcgccgaacagttgcacagcctgccgctggtggagcaattcccacgggcggtggcc
gagcatccctacaacctgagcttcatcgagcacagtggaatgcaggcactgttcggcgcc
atgcagttgctgaagaagaaataa
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