Herbaspirillum rubrisubalbicans: Hrubri_3197
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Entry
Hrubri_3197 CDS
T04238
Symbol
ddpA1
Name
(GenBank) ABC-type dipeptide transport system, periplasmic component protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Hrubri_3197 (ddpA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hrb02000
]
Hrubri_3197 (ddpA1)
Transporters [BR:
hrb02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
Hrubri_3197 (ddpA1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Big_3
DUF2989
Motif
Other DBs
NCBI-ProteinID:
ALU90358
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Position
complement(3732364..3733902)
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AA seq
512 aa
AA seq
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MNAIRKSIMGWSRCAVLVGGALTALAAHANKANDTLVYASDSEVENISQYHNNLREGVIL
AHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFN
YAVSPESKAVTRQNIDWIKSVDKLGEYQVRINLKGPFPAALEYLTGPLPIYPAAYFKKVG
LEGFSKAPIGTGPYKVTSVTPGQGVTLVKNTNYFKDSPQGQPSIGNIKFVVIPDPETRAA
QLMTGAIDWIWRVPPDQADSLKTNPKLTVQSGETMRVGFITLDVTGSSAPNSPFKDVRVR
QAVNYAINRKGYADNLMRGGSQPVYTACFRTQFGCDSNAAIKYDYNPAKAKELLAAAGYP
NGFDTDIYAYREREIAEAIIGDLRKVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFS
MNDTSAFAGVYFKGSADDITKDPQLQQYLQTADTSIDPAVRKANYSKALELISKQAYIAP
MFSYSTYYAYNAQLKFQGYPDELPRFYEASWK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaatacgcaaatccatcatgggctggtcgcgctgtgcagtgttggtgggcggg
gccttgacggccttggccgcccatgccaacaaggccaacgacaccctggtctatgcctcc
gacagcgaagtcgagaacatcagccagtaccacaacaacctgcgtgaaggcgtgatcctg
gcgcacttgatctgggatacgctgatctaccgcgatcccaagaccaacgaatacaagccg
caactggccaccgcctggaagtgggaatcgcccaccgcgctggtgctggacttgcgccag
ggcgtgcaattccagaatggcgacaagttcagtgccgacgatgtggtgttcaccttcaac
tatgcggtctcgcctgaatccaaggcggtcacgcgccagaacatcgactggatcaagagc
gtggacaagctgggcgagtaccaggtgcgtatcaacctgaagggcccgttcccggcggcg
ttggaatacctgaccggccccttgcctatctatcccgccgcctacttcaagaaggtcggc
ctggaaggcttttccaaggcgcccatcggcaccggtccctacaaggtcaccagcgtcacg
ccagggcagggcgtgaccctggtcaagaacaccaactacttcaaggatagcccgcagggc
caaccttccatcggcaacatcaagttcgtggtgatccctgatccggaaacccgtgccgcg
caactgatgaccggcgccatcgactggatctggcgcgtgccgccggaccaggccgattcc
ctcaagaccaatcccaagttgaccgtgcagagcggcgaaaccatgcgggtcggtttcatc
accctggatgtgaccggtagctcggcccccaattcgcccttcaaggatgtgcgcgtgcgc
caagcggtcaactatgcgatcaatcgcaagggctatgccgacaacctcatgcgtggcggc
agccagccggtctatacggcctgcttccgcacccagttcggttgcgacagcaatgccgcc
atcaagtacgactacaacccggccaaggccaaggaattgctggcggcagccggttatccc
aacggcttcgataccgacatctatgcctatcgcgaacgtgaaatcgccgaagccatcatc
ggcgacctgcgcaaggtcggcatccgtgcgcgcctgcactacatgaagttcgccgccctg
cagaccgagtaccgcagcggcaagacgcccatgagtttctattcctggggctcgttctcg
atgaacgatacctcggccttcgctggggtctatttcaagggtagtgcggacgacatcacc
aaggatccgcaactgcagcaatacctgcagaccgccgacacttcgatcgatccggccgtg
cgcaaggccaactactccaaggcattggaactgatttccaagcaggcctacatcgcaccg
atgttctcctactcgacctattacgcctacaacgcccagctcaagttccagggctatccc
gatgagctgccgcgcttttacgaagcgtcctggaagtaa
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