Herbaspirillum rubrisubalbicans: Hrubri_3308
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Entry
Hrubri_3308 CDS
T04238
Symbol
trpB
Name
(GenBank) tryptophan synthase (beta chain) protein
KO
K01696
tryptophan synthase beta chain [EC:
4.2.1.20
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb00260
Glycine, serine and threonine metabolism
hrb00400
Phenylalanine, tyrosine and tryptophan biosynthesis
hrb01100
Metabolic pathways
hrb01110
Biosynthesis of secondary metabolites
hrb01230
Biosynthesis of amino acids
Module
hrb_M00023
Tryptophan biosynthesis, chorismate => tryptophan
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Hrubri_3308 (trpB)
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
Hrubri_3308 (trpB)
Enzymes [BR:
hrb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.20 tryptophan synthase
Hrubri_3308 (trpB)
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Paralog
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GFIT
Motif
Pfam:
PALP
ComFB
2-Hacid_dh_C
Motif
Other DBs
NCBI-ProteinID:
ALU90468
LinkDB
All DBs
Position
complement(3861194..3862453)
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AA seq
419 aa
AA seq
DB search
MKELNPLGGFAERQAIPAAALHQTAHYNLPDARGHFGPYGGSFVSETLTLALNELREAYA
RYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSELAGGAQIYFKREDLNHTGAHKINNVI
GQALLAKRMGKQRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL
GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGNEC
IQQMPEIAARQPDYVVAAVGGGSNAMGIFYPYIDYPDVKLVGVEAAGDGLDTGRHSASLT
LGSPGVLHGNRTYLLQDANGQIIETHSVSAGLDYPGVGPEHAWLKDSGRASYACITDDEA
LDAFNTCCRIEGIIPALESSHALAHAAKLAATLPRDQIVLVNLSGRGDKDMHTVQQRQG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattgaatcccctcggcggtttcgccgagcgtcaagccattcccgcggccgcc
ctgcatcagacggcccattacaacctgcccgacgcccgtggccacttcggcccctacggt
ggcagcttcgtgtccgaaacgctgaccctggcgttgaacgagctgcgcgaggcctatgcg
cgataccagcacgatgaacaattcctcgctgaatttcataccgaactgaagcatttcgtc
ggccgtcccagcccggtgtaccacgccaagcgctggtccgagctggctggtggggcgcag
atctacttcaagcgtgaagacctgaaccataccggcgcccacaagatcaacaacgtgatc
ggccaggcgctcttggccaagcgcatgggcaagcagcgcatcatcgccgagactggcgcc
ggccagcacggcgtggccaccgccaccatctgtgcgcgcttcggcatggaatgcatcgtc
tacatgggcagcgaagacgtgaagcgccagttgcagaacgtctaccgcatgaacctcctg
ggcgccaaggtggtgccggtcgaatccggttccaagaccttgaaggatgcgctcaatgaa
gccatgcgcgactgggtcaccaatgtcgagaccaccttctacatcatcggcaccgtggcc
ggtccgcatccgtatccgatgatggtgcgcgacttccagtcggtgatcggcaacgagtgc
atccagcagatgccggaaatcgctgcgcgccagcccgactatgtggtggcggcggtgggt
ggcggctccaatgccatgggcatcttctatccgtatatcgactacccggacgtcaagctg
gtcggcgtggaagccgccggcgatggcctggacaccggtcgccactcggcctcgctgacc
ctgggttcgcccggcgtgctgcatggcaatcgcacctacctgctgcaggatgccaacggc
cagatcatcgagacccactcggtctcggccggcctggattatccgggcgtgggcccggaa
cacgcctggttgaaggacagcggtcgtgccagctatgcctgcatcaccgatgatgaggca
ttggacgccttcaatacctgctgccgcatcgaaggcatcatcccggcgctggagtccagc
catgccctggcccatgcggccaagctggcggccacactgccccgcgaccaaatcgtgctg
gtgaacctgtccggccgaggtgacaaggatatgcataccgtgcaacagcgccagggctga
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