Herbaspirillum rubrisubalbicans: Hrubri_3379
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Entry
Hrubri_3379 CDS
T04238
Symbol
dctD
Name
(GenBank) C4-dicarboxylate transport response regulator transcription regulator protein
KO
K10126
two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Hrubri_3379 (dctD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
hrb02022
]
Hrubri_3379 (dctD)
Two-component system [BR:
hrb02022
]
NtrC family
DctB-DctD (C4-dicarboxylate transport)
Hrubri_3379 (dctD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_50
MDMPI_N
RsmI_C
HTH_28
AAA_16
Mg_chelatase
HTH_30
AAA_2
TIP49
AAA
HTH_17
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
ALU90539
LinkDB
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Position
complement(3947415..3948752)
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AA seq
445 aa
AA seq
DB search
MDTPAAAPSAILIEDEQAVRRATAQALELEGFTVTACASAEEALPLLTRDFPGVLVTDVR
LPGWSGLQVLAHVVAIDADLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFGSDSLLEIAL
RAQEKRSLVLENRRLREAWAQDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGS
GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEAGAFTGAQKRRIGKLEYAHG
GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKVDLLKLAGQGQF
REDLYYRIGVVAIDLPALHQRSSDIPLLLAHFCQAAAVRYRREVPPWTAAQMQQWQQREW
PGNVRELRNFADRWVLGVEQMAGTGLPVGAQPALPLPEQVEQFEAGLIAAALKDSEGSVA
LAAERLGIPRKTLYDKIRKYQLAGT
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggatacacccgccgctgcccccagcgccatcctgatcgaagatgaacaggcggtgcgc
cgcgccaccgcccaggcattggaactggaagggtttacggtgaccgcctgcgccagtgca
gaagaggccttgccgctgttgacccgggattttccgggtgtgctggtgaccgatgtgcgc
ctgcccggctggtcggggttacaggtgctggcccatgtggtagccatcgatgccgatttg
ccggtgatcgtggtcaccggccatggcgacgtcggcatggcggtggaggccatgcgcgcc
ggtgcctatgatttcgtggaaaagcccttcggctccgacagcctgctcgagatcgccttg
cgcgcccaggaaaagcgcagcctggtactggaaaatcgccgcctgcgcgaagcctgggca
caagacccggagttgccgccattggtgggccagtcaccggccatcgagcgcgtgcgcacc
ctcatccgtagcctggggccggccgatgtcgatgtcctcatcaatggtcagaccggcagc
ggcaaggaagtggtggcgcgccaattgcacgccgccagcggccgcaaaggaccgttcgtg
gccttgaattgcggggcattgccggagacggtgttcgaaagtgaaatcttcggccatgaa
gccggcgccttcactggtgcccagaagcgccgcatcggcaagctggaatatgcccacggc
ggcacgctgttcctggatgaaatcgagagtatgccgttggccttgcaggtcaagctcttg
cgggtgctgcaggagcgccggctggagcggctgggcggtaatgaatcggtggccatcgat
tgtcgcgtggtggccgccagcaaggttgacctgttgaagctcgcgggccagggccagttc
cgggaagacctgtattaccgtatcggtgtggtcgccatcgacctgccggcgctgcaccag
cgcagcagtgacattcccttgttgctggcgcatttctgccaggctgccgcagtgcgctat
cggcgcgaggtaccgccctggacggcggcgcagatgcagcaatggcagcaacgcgagtgg
cccggcaacgtgcgcgaattgcgcaacttcgccgatcgctgggtgctgggggtggagcag
atggctggcactggcttgcccgtcggtgcgcagccggccttgccgctgccggagcaggtg
gagcaattcgaggcgggactgattgccgccgccctcaaggacagcgagggtagtgtggcg
ctggcggccgagcggctgggtattcccaggaagacgctctacgacaagatccgcaagtac
caactggcaggcacctga
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